Scaffold Ga0214921

Basic Information
Taxon OID	3300023174 Open in IMG/M
Scaffold ID	Ga0214921_10000355 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023174 Open in IMG/M

Scaffold ID

Ga0214921_10000355 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	87239
Total Scaffold Genes	101 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	28 (27.72%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

87239

Total Scaffold Genes

101 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

28 (27.72%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017268	Metagenome / Metatranscriptome	241	Y
F038565	Metagenome / Metatranscriptome	165	Y
F039478	Metagenome / Metatranscriptome	163	Y
F043788	Metagenome / Metatranscriptome	155	Y
F050171	Metagenome / Metatranscriptome	145	Y
F071967	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000035517	F039478	N/A	MLKKILEFIDGVFEEEKEQPVLGTLYKIKGEALPFRYIRFTNEVYSNKRVYHFKHHQLKEYKFNNLSKVERKANKEEVRIYNLIKDHVNEVAENN
Ga0214921_1000035521	F071967	N/A	VSNQSEALAICSEFAEEYGIDSKDNNKIIVYMKSEYINELKNMLENKNYKLKSFQVYGDEAIVYFVPNKRR
Ga0214921_1000035523	F017268	N/A	VNLDITLLFNLILGALSFLGGWLFTRVFSLFDKQESLMKEINDKTFSDFITLRKEMEAEGRKHQQEISDLALKISTTYVTKESFDDYFDRIEKKLDRNFDIIQQHLINKK
Ga0214921_1000035566	F038565	N/A	VTNKKKFNFPPALLKQIDECSFGGYILFNFSNKGEPQVYTKFDNQINAMALLYYLNTWGQSIDQLNLEATTDLIARKNEEEDSEEQD
Ga0214921_100003557	F050171	N/A	MGMFNYIKVEQDLPLNDELKALNIDFKKEEFQTKELEESLMSTYIIRDYRLFELKITSHWEDNPDYVKDGSRFGEFFNKNKLVEDSREEVFRDDYTGTFTFGAYISGKTKESYDYFPDWKCVVVQGLLREISLIKPIEKNSSGQRIEAQESFMKEIEDHERKMKCPVYSFYFKYYVKTMNLIEWKLSIGIVKIINFLNWLQWKAIRKAIRFLSPR
Ga0214921_1000035573	F043788	GAGG	MASLDDIYDIIQKLENGGIEYLLITVQKGKKQGKADVFFNLKDKASMKILATGLAAFNKEIDNIDRQDEDEDDE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214921_10000355

Overview

Ecosystem & Geography

Associated Families

Sequences