Scaffold Ga0214921_10000277

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10000277
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 100832
• Total Scaffold Genes: 84
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (10.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013274	Metagenome	272	Y
F013864	Metagenome / Metatranscriptome	267	Y
F015065	Metagenome / Metatranscriptome	257	Y
F042182	Metagenome / Metatranscriptome	158	Y
F073089	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000027717	F042182	N/A	MIHSILDQTRKPDLFLLNIPEEFARTGESYVVPKYIRKSLTVNRISIDYGPATKIVPTVMYLTDRERCVKFDPKYTRIIYLDDDIAYSKKMVETYERMIAPNDDNVWTTTGFDFVNMHLNGKRVHKDIATIAEGYGSVCVKLNTFGDDFMEYMARYTAAENQICRLSDDIILSNYYHRRNVGIYIINLPGFLSIQDVWDEQRILEYGNQDDALHMGASGTSDNNVDRYKRVITALNKAKDRKFKISFITTETDASTGVIRNTLVYR
Ga0214921_1000027728	F073089	N/A	MSEVYASNQVLPIPEHIPEPTTVPSENKCTKIILEGIGWAGSILVLCPYVVTLEKTIDFVLNTLGATGLLIVCIKSKQYQSIIINTAWIIGGIYKYYASS
Ga0214921_1000027734	F013274	N/A	MDKIAGPNDLVPSFKIFSILIIITIVVKMVFQYSYNENAAPSFSNVSDMSDIELIKDEVKNKDSSDLKKQITVYFKSYIFYYLTLLWTVCLMVTIVSITLNKYDTEKPGCIAKMSMLNMIPITMFMLLLGWIIYQNTVYYNKINSGHVAESYVTFDTAVNILLLIQAGIMYAYINQQMLCSSEMGQYSEAMSKYGPYIAAFVALLAGGCMVLNEIILKFFTTDG
Ga0214921_100002775	F015065	N/A	MSTPTQFKPICTQNDMRLGKNPEMKLFTLEYNYNNQHFNIVSLINVNLHKLLHEVNKDIIDVIDIHPHPTDPSEHNILYQFRDIGGDLGGLKTYMYVNTKIAKRFATNGNTEIIFTSKSVPYEYHTDLVQQKYKLLEYPLYIQKYIYQEASVTSSPVSSIQVLHMFKLKPDNESELTVAMENAIGILIKKMYLRLKVAIESLR
Ga0214921_1000027783	F013864	N/A	MNTLIPSITEDNTDGLAKYVVLGIFLILALVTIQYIFRNHIGMIEGLTNRKSKTSDPLEDENDGDIITIAKRQEELASKTQKSLNMDSHYTHYNKIIENMDEWVNAKIVNSLKNVSREVHGEGKMEDIIRHMNELNTMNKFKLTLEECARYIDTK