NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10000230

Scaffold Ga0214921_10000230


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10000230 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)111556
Total Scaffold Genes144 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (17.36%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050364Metagenome / Metatranscriptome145Y
F051137Metagenome144Y
F086587Metagenome110Y
F087204Metagenome110Y
F103266Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_10000230126F086587N/AMLTENNKFEEYRYAIRHKPTQKWVKFKNDDLELTVTTIKLVNFKDCLISSATKDILETFLKVSAFNNTPNYGKENFLEFEIVKVLTTYTIES
Ga0214921_10000230132F050364AGGAMIPRKYATYQNTKVGDKIKFRESTKHWFLNREENAKKLVSGQVYTVKKISVASSSTGVILEETNEEVELTWFDIIE
Ga0214921_1000023031F103266N/AMIQRPEQEDLIGGLVQIDNYKGSQFELDGWKLTKVLDDILMVQFSDINEDGDLVKRGSMWVPINAVNHVWRVGKVLLAGPNCRTVKEGDNIVFPNDRGIQVSNLNGLKHIVFLNEARIFGICESNTSE
Ga0214921_1000023068F087204N/AMLLYSIFMIITSTQQIEEMINPSNALDMTEFEDTTLKLGSFVCIAKKKKFNFLNFLKLILEDEKTQKIYFNLLGETNIQLIIRAYLNSTPNVYKKIFRSKFNHKNKN
Ga0214921_1000023073F051137N/AMSKNKVTTCSYFIKRLRDSGYVADKLFSDYSHADPRSWTAIIDPLYSSIFVTCYNNHNDLGEEYFEIYDGGQYIPDGFKIKTSSIEVIVEYLVKFNINHKASTYVGA
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