NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10000228

Scaffold Ga0214921_10000228


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10000228 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)111819
Total Scaffold Genes127 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)81 (63.78%)
Novel Protein Genes17 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)10 (58.82%)
Associated Families17

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005589Metagenome395Y
F010161Metagenome307N
F029104Metagenome189Y
F045090Metagenome153N
F045757Metagenome / Metatranscriptome152N
F045758Metagenome / Metatranscriptome152Y
F051920Metagenome143N
F061849Metagenome131Y
F064720Metagenome / Metatranscriptome128Y
F066782Metagenome126N
F068842Metagenome124N
F073560Metagenome120N
F082697Metagenome / Metatranscriptome113N
F087202Metagenome110N
F088907Metagenome109N
F093860Metagenome106N
F105191Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_100002281F066782GAGMNEEILKKLGYNNIALEMLLRREAQISPEDIIMPGDRPNLNRDNSFDDLNSDTKSDIENILNKLDEVKELLNNLPEYTVAEEQYDEDVRAFPMHKRYAKDELENLIEEIKQLQRYA
Ga0214921_1000022819F029104N/AMKPSFKEFLEKIDYNDPSDYDFDADEAIDKNIKETIKNINKSSWCWTLWSCEGHNHSEDEKSLPYFVFIVKKKCIPVLLGLLFNTLDPDIDVKTMLPLCNTNSINVSWGFTDDKYAIVNVHWAHNFLEEENQHKKLLSDLYEMSFKILEAKL
Ga0214921_100002282F010161GAGGMLYDALIDYVSYFYNCSDMPDSAKLNALKIFEALQDEKIDVNDFIPVMRQMQFSLDLLAT
Ga0214921_1000022820F073560AGGAMLVCDVSAIDKLIDLYFDNLSVIFNDKKFLLYDLRDHFVDNNIECSIYDHEITTSGIYFKDSLIVEIDKQQDFRKDDTINI
Ga0214921_1000022821F005589N/AMAKYKHSFWRYVPSTEKYKSEFKFVESFETDSDTVPEFHDHYCIDHMINLETGQMRVKNHSAPEYCVSKYIGWGLCLPPVEKANKQEIYLVIHRSSFSHKKIEFDEFLEPKDKRYTQEEFEYLLSVIEKKFNKQKEWAKDGIKIPSQYEDGTQVFKTEEEFRAFSFGRRAYFLYHLVRNYNFTHLIRRLNIGYTQ
Ga0214921_1000022825F105191AGGAMKKFVLTVVAIVAATSAFAADPIFGAKPPVKKAGVDFTTQSVGVQLQDNKFFVNYANDGKDWFTITNPGKTVPDVENYVGGLLKGTRFVSVVATNGKETRVSYGFEKQLVKFDVPVIGTNATVMGQVFPTGFGGGSFSNLNLSNNWAWGVRVGFDVSKLKLPKLF
Ga0214921_100002283F045758AGGMTIREILNTENKVSSVEEFFALLYNQKIHPAFRVFSDLSINFNSLEGMSVFCSELEGAVYFKLCFTDAIFLLYKFNNLNDCEDVWCIDFELYRAALRSCVKAVDKKYIPVKDINERIF
Ga0214921_1000022841F045090N/AMNYDLCDLLNRKMENANGYMPDNFPNRSNFKNQNIVDEFFETLSPEDYLEAMESEVCDHQCFAFWIYRNGKISDQLDDYDKSARRITRELANLSYSNSPALDIMYFSGCMKVIIANNKALYLETCIRPSLDQMFTIKDLELKHLNKSGKVIWRIVERKKKLNFYDGIGVNDLHGFKWSRI
Ga0214921_1000022844F061849GGAGMSVIYGLYNQHLRSSVGFTFTGTIAYATIPWHPQSTIDEIRVTNTAGTAFTITALNILDAGAHYRNSTTDGKAHVILRDPTDKNATGNEAYWTSYEFNPPVFHENLYDRPYLNVAVSLTESKTNFPIRITATGKKAVSTSYQKADSLGLEVLNDYRVLIGKGQSGTGGSGGTIYDVTGIAKGTGGENASQFSLSATNDFVYIGSRKKIDHWEFQVGLGLTAPAVLQGQYWAGSGSTFGWQSFGVIDDTSTGNSDTMKFSGIVEGSGLGSSVWVPTKADFSSSMFLPNDPLTVQQNNIIAGNYPIVVLPPNPERYWVRFNLSAVGGVVNFNRILPVAETYEQF
Ga0214921_1000022849F064720GAGGVENKSLKLRLSKGQILTVSAILIALTSVSYQLYLLRKKSKNKEMGEAYFVYPED
Ga0214921_1000022868F087202AGGMNFKNFLKLASFFDQQGKYKTSDKIFKIVKAEIDNLDDDPLGISNIQPSGMKDDPVVKKLRQMVMNGEISEQQFWIELEKHKPGTFENMLSNVGKAGDYDIDKIERNIASQGVRVNPKERDIFAKFYELSNDVYVDFIDSLQSNFASVLRTMARKDELPEMFLSIQDHRAGNLIMELIEPSTKEEFLTREYLELKAKGIGLSDAVELSTGGDYSDINEYLKAFVESEVPTITSQASVITGLRYQEDDVARKLSDVTVNTLNETIDNSLTELYYVYKG
Ga0214921_1000022881F068842N/AMWYRFSQQQTFDNLAATSSPSMIYQGASQGIKTDAAGKAAVQKFMNDGIPTAIKDVTNGKMITLAHGNLTNGQFAIVDQNGQGINQDQYVQWANQNGLNPNNLLLSCYEGAANTGAFKSLTSYRGKLMVSTSVNPDENGNFTVFVSGG
Ga0214921_1000022882F093860N/AMAKHIVFQPVDLDSDDNVKDTVLWGASFQVHPEIEPTIPQEMLALVNNKSAIAYPLAYWVSEFAKLGFELDIDFPYCKEFVWDYVMPDAVRITIKAKDLNTNYNQIIIPKPLAKKLLDEMNLPLFGKMHPEKFHKKLISYIDISSKSYDMEEKVFEILTELEDLCAECVSYESFVEWKVS
Ga0214921_1000022883F088907AGGAMSHFYNRKSYSFAETDEMMTEIKREMSNFLTKEEAELILNRRYAMVDPPPYRMNDEIQILHKEIDDLRREIYFLRTHLNKIQNKFDIDEPTL
Ga0214921_1000022885F045757AGGAMRNVFAILCLFVFLANSVFAHQEEKKKEPVYTVISTKYVLTSTIIDDFFRAAKITTYSYNKEEINKIKIPKFQIWEKNFDDTKYLLEKFLSIQFESDEKKTYYMVKKK
Ga0214921_1000022886F082697N/AMDLNNLDEEQILELQKQFEENRKIILSMDPEEFLERIIKLHDSTDVILEGYDLSTDINGGQGISMAGIIRLRNALMDAVEWITHNLTEEDLEEEL
Ga0214921_1000022893F051920N/AMHKFSIYKEKNPNLRWLIVEEGNINIETGIRFIYALLDDEENVLEKKVFIINGNDFSDIGLSGKDTRIAIIELLLQSIEAILVQE
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