Scaffold Ga0214921_10000217

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10000217
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 114873
• Total Scaffold Genes: 161
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 123 (76.40%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006060	Metagenome / Metatranscriptome	382	Y
F034483	Metagenome	174	Y
F038106	Metagenome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_10000217149	F034483	AGGA	MKIFVSGTSNLGDFLNAMPVLSGVSKDVAKFDLVIKSEMRKFNGLKEFLLFQDLFTDVSFDDELFIYGDVINLSSWPIREDKEDPNRPTETCRYENWLNDKYRMLFKVDDDFVPLTPEYDIEIKDAYYVGDRWAVGNIDDRRETHILSHLKDCEFIDFNRPMLENAYIIKNLKKPFITNFTGVGMLADLCNVPLYCVWKAEDWKPEFRVGDDVSWDNGKNINQIFEKHFYLNRKAKLVHANELQSLL
Ga0214921_1000021786	F038106	GGAG	MKQFSYEEKEAVMKAIFANHISPVGFRSIYKGMPIGNYETIKQFIDFTKYFVMFRGPRNRGASSTRKRDAKAFDVYERDARTVREIRIEREAFQRGVRWANNRSH
Ga0214921_1000021788	F006060	AGGAG	MLKFEGIAKVGDVIRAYDFKPCAGRDDAFIEGVVEQANCNEPGFNCYKITVTADKFVKFETRPNKKNRVGKIMFVPHQTSFMEFDFRVINLSRG