Scaffold Ga0214921_10000203

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10000203
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 116950
• Total Scaffold Genes: 92
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 54 (58.70%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010226	Metagenome / Metatranscriptome	306	Y
F012339	Metagenome / Metatranscriptome	281	Y
F017480	Metagenome	240	Y
F042217	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000020318	F017480	GGAGG	MSNTEVNKPQSPKPADAQRRPNEQGTISVQAHMRIFDPKTQKTYVEGRA
Ga0214921_1000020361	F042217	N/A	MKVVKLDRRFRQFKQHGHVIAVRCDSWLGEGVALEKICNAKLEGHGYMPDNDWHAYFGKDNGRPNRPFWISFRREADLTLVLLSA
Ga0214921_1000020378	F012339	AGG	MVYKPYNENLNTPTQQNPHSPATSGYKQQPVEIPGVLHQTRELFQPVVIQPNQDSK
Ga0214921_1000020379	F010226	AGGA	MAIQVIKDTAGNVLWTTDKAQINSESTNVTYQVFATALGTANAVGNLYANAVSVPNGTTQEIYVGAGNYLTLTGNNFTALALGTASSAQSGVIGGGS