Scaffold Ga0214921_10000201

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10000201
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 117727
• Total Scaffold Genes: 167
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 127 (76.05%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006060	Metagenome / Metatranscriptome	382	Y
F034813	Metagenome	173	Y
F038106	Metagenome	166	Y
F046912	Metagenome	150	Y
F083691	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_10000201140	F083691	GGA	MGISAYKEITEWNEPEFVIPNHTYLFDGKSNILAYARESDGQVTVFSKPMPMDTRRRKFIKVKHKELDAISATVVVQQPKALNVPNWQVKSDSGKTYTVTLESGKYQCNCVGYSYRGKCKHSEQIKNENSN
Ga0214921_10000201142	F046912	AGAAG	MLVKIMNKNNYQIDWNKLANYNIVVNTQPKDPLQDVVKNDELVSWMQEYPDAMDAINKIKAKK
Ga0214921_10000201143	F034813	AGGA	MSYDSDVENIYMVEFESGRIIHLSFYEVQDVKEFCAEEYSDETIKVIYKEVYVGEDNE
Ga0214921_10000201145	F038106	GGAG	MKLNYQQKEDIMQSIFANHHSPIGFRSVYKGVPIDNYEQIKQFIDFTKYYVMFRGPRPNIGQNSTRKRDAKAFDVYQRDARTVRELRIEREAFERGVKWANNRSH
Ga0214921_10000201149	F006060	AGG	MLKFEGIAKVGDVIRAYDFAPCAGRDDAFIEGVVEQANCNEPGFNCYKITVTADKFRKFETKPNKKNRVGKIMFVPHQTSFMEFDFRVINLSKV