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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300023174 Open in IMG/M |
| Scaffold ID | Ga0214921_10000151 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 131438 |
| Total Scaffold Genes | 140 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (10.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes | (Source: IMG-VR) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002779 | Metagenome / Metatranscriptome | 530 | Y |
| F017295 | Metagenome / Metatranscriptome | 241 | Y |
| F087203 | Metagenome / Metatranscriptome | 110 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214921_100001514 | F017295 | N/A | MTPQLEKVFFNYVLQYKKYFDIVKPHFFRNSQIQFVYGVLRNYILAQSDSKIPTARQILDMVSLEDKEGQITKEILKSILQVKLSEYDEKNFIEPKFNAWVLSNRLKTGTVDIIDETRNLDQISDFDKAVEAADRIKSIVDEMSSTNFVQDDDMGSDFDDPENHVQDSSKFKIKSGFETLDHMLGGGWDIQTLNCIMAETNNGKCCHFVSKIVLKNKKNDKMSIRDFGTLFSEISKGITMTKR |
| Ga0214921_1000015174 | F002779 | N/A | MKNLKLELFNFKRSLTLDQEEICQIVEGHMNACDTHSEKNIVMSLNERLKPYTYDKSVKSLLESLNDDMSNYELLYELKNLYNVLNSKNQGELYRQPINVILQTINLDSDQDRLSKILNELSVYDWVPEIKLFVHNLTKSPEKRANLLSGGKSESVYTIVETVEDGHIALIKDSWFLLTENSIEKTLLENNVKNEEELTTLRTLQTAMNYATIVEDRINFRISEYLTLGMSVSKKGLLFVNDDELNEETTLESLFSSPIVPIVNKNFYPMLQTVSENLDKFVELDVVKRVTNLINPYLECFAFNYKNNVYLYRCDERYGNSFFKYESALELVNEIKNELNYDLTYFFEDKLSKELVVKRKLEDKEREVTLKLEDVKFNIEKVKSSIKLIGESEVLTTALKNLEKRKTVLESELNGVKELQYNERIKL |
| Ga0214921_1000015192 | F087203 | GGA | MILTREIEVRITESNFSYYEDLGYEVFIGEELVIPTELLSKGSHYRIICKCDTCGIQKEVIFKNYIKYNNNWGEYFCRKCSEHKRKKTLRKNLGVDYPIQNEKVMDKMKKTMVNKYGVDNISKREEKNE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |