Scaffold Ga0214921

Basic Information
Taxon OID	3300023174 Open in IMG/M
Scaffold ID	Ga0214921_10000119 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023174 Open in IMG/M

Scaffold ID

Ga0214921_10000119 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	150318
Total Scaffold Genes	229 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	167 (72.93%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

150318

Total Scaffold Genes

229 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

167 (72.93%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	(Source: IMG-VR)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae

(Source: IMG-VR)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015996	Metagenome / Metatranscriptome	250	N
F028172	Metagenome	192	Y
F029659	Metagenome / Metatranscriptome	187	N
F036228	Metagenome / Metatranscriptome	170	N
F043920	Metagenome / Metatranscriptome	155	N
F043921	Metagenome / Metatranscriptome	155	N
F090380	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_100001191	F043920	AGGAG	MRGSIIMLVSFLIVFGAVGGIEVNPDADLLTLMMIAIGGLIGMLIGVSVMREDA
Ga0214921_10000119116	F029659	AGGAG	MLQNINSAIDAFQSTKTQFVKTFVKNEELAKPLNTFIEAQTSYAKAVAVEVNKFFTTLGMSAYTFDAKKAFSKSK
Ga0214921_10000119128	F015996	N/A	MIKVTEWYNWIVRQFGEICGWIGLVLIHGSTVPVTYLAIQGEPTVLPPLSMVILIWSGLLLFFVRSAIMKDKLYMLSNGIGFFMQSIMLAFLVLK
Ga0214921_1000011921	F090380	N/A	MKTESTLSSLGEIDLKKLNPKNLALDSVRTDNAHVKEFLSNFQSEFWLAHRIKIHHSVKVTKEHLVRDRVIVFIYKKQSFTSVNDVLKLVRKYEFPEKYVLRLMSEYKTCHCIMFAIEADGDIAKYKVYCETPFKNFGFGFKWVKSKSVVTRYDLRSASEYKSLIDASGFNLYPEFLEKTKITRAASVKDENTSKRGFELEFDSLRLNDISRDVSNLTFINIHDKLKDLSNLPIIHFSGGLESNGDKYFNLYFVVL
Ga0214921_10000119217	F036228	N/A	MMGRVEMSDGGKGSAPRPFSVSQEEYANRFDAIFKKNIKAAEEIHSDKGYELGTKEGYEAFAKKRQEAALDEMVRVSQEMGLYDDEFDAIHKYNEETKEVKFRQTYKK
Ga0214921_10000119228	F043921	AGG	MKSIFIMGVLVVLTGCGTVGGTLQGAGQDLNQAGQYIKNVGK
Ga0214921_1000011990	F028172	AGGA	MKILSEYFGDEIDRHAEIYFDENFFKVRVRNELGSYFVAFFNNLDEAENFAENYVRGETNEP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214921_10000119

Overview

Ecosystem & Geography

Associated Families

Sequences