Scaffold Ga0214921

Basic Information
Taxon OID	3300023174 Open in IMG/M
Scaffold ID	Ga0214921_10000118 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023174 Open in IMG/M

Scaffold ID

Ga0214921_10000118 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	151419
Total Scaffold Genes	192 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	97 (50.52%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

151419

Total Scaffold Genes

192 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

97 (50.52%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (62.50%)

Associated Families

Taxonomy
All Organisms → Viruses	(Source: IMG-VR)

Taxonomy

All Organisms → Viruses

(Source: IMG-VR)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001246	Metagenome / Metatranscriptome	737	Y
F013631	Metagenome / Metatranscriptome	269	Y
F053990	Metagenome / Metatranscriptome	140	Y
F054636	Metagenome / Metatranscriptome	139	Y
F056606	Metagenome / Metatranscriptome	137	Y
F059435	Metagenome / Metatranscriptome	134	Y
F073458	Metagenome / Metatranscriptome	120	Y
F081075	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_10000118109	F081075	AGGA	MRLHIKKICNDTIQQHIDRMHDLCEEGRPRDAECIYSEIRDWVIQKENLEVLSLDYISGNFLDF
Ga0214921_1000011813	F053990	AGGAGG	MIDTCVLHDDYEDFAQKFLGVDYEDFVGLQLGLPDEDEIEIEYSLSI
Ga0214921_1000011814	F073458	N/A	MSANLVALAAELVDTNPAGAQLIVNITKAETGAELVEALDNYDATVLENYTEAVDDGYVTLTDADGVVTAL
Ga0214921_1000011820	F013631	N/A	MITDVFHYTTSRWDWQTGDVNQMWIQEIEEAPDVYRYIAVAYNPRKDTSMVMSNPRGYFDTLHWVRKFCGSFSILP
Ga0214921_1000011836	F054636	GAG	MRLDFDDYERDMLIDTIQHRLDTDKILVINDSLREEIEDLLRKVEENEYL
Ga0214921_1000011837	F059435	AGG	MNTYNISVNGNEILSQVPQSNLQDNLRIIRGLVWTSGGNDGDIQVEINKDETICNE
Ga0214921_100001184	F056606	N/A	MTIRAEQIVNATLELTLRPQSEDRKKVVACVIRETADRLCTDLGEMECPIDKLRQIADEVEAL
Ga0214921_1000011897	F001246	GAGG	MSVVIAWALANQALIATVLFAVSEALGANPKVKSNGILSLILLQVQGQLKSKGAKDLTP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214921_10000118

Overview

Ecosystem & Geography

Associated Families

Sequences