NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10000057

Scaffold Ga0214921_10000057


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10000057 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)202294
Total Scaffold Genes247 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)181 (73.28%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007110Metagenome / Metatranscriptome357Y
F007305Metagenome / Metatranscriptome353Y
F043902Metagenome / Metatranscriptome155Y
F054798Metagenome / Metatranscriptome139N
F084821Metagenome112Y
F085623Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000005713F054798AGGAGGMIYLYLNETQKLAEIVAELVKLNIGVVAELHGNKWHIEVTQ
Ga0214921_1000005721F043902GGAGMTVQQLRNDGYKVRVLHNRLYNGYHAWQNGSRIHTDDITEPDTKGGSTQIIIDSPDGKHFRGLAICSKKENYNKKMGVKIALGRSGVIV
Ga0214921_1000005724F085623N/AMLEFDLIEIHHNKKLKNKPYLVRVYSYNNSDPHELRLNENDLKNLYKILKEYKYL
Ga0214921_1000005774F007305GGAMKILNKTIRKAYQNWNPNRLIRCYHYAAAFDGTKLICFTQNNPIKTHTGAYRIGEDFNLEKYKEFPYYHSESRLISKLLDKYNTIDSNWSIVVMRINRKGLILGSKPCKNCDKLLNAVGLNTVYYSTDDGNFIDSVGNLIEGNELTMPMVMI
Ga0214921_1000005775F007110GGAGGMNCVYCKNCVGVDRYEFLVETGRKIICKDCSVENRAIGFLSYSHKTAPELVMIPANNKEEIRRCKRVNRRAR
Ga0214921_1000005777F084821AGGAGGMSNMTWLQLYNFLYERANDINNPGSFPWQENVQVFDFETLEYYPTDFIQMPDNKISLSIDTSNTNMETV
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