Scaffold Ga0214921_10000052

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10000052
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 217413
• Total Scaffold Genes: 318
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 87 (27.36%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (50.00%)
• Associated Families: 14

Taxonomy: All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Imitervirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014710	Metagenome / Metatranscriptome	260	Y
F016772	Metagenome / Metatranscriptome	244	Y
F026209	Metagenome / Metatranscriptome	198	Y
F032917	Metagenome / Metatranscriptome	178	Y
F036073	Metagenome / Metatranscriptome	170	Y
F044902	Metagenome / Metatranscriptome	153	Y
F055399	Metagenome / Metatranscriptome	138	Y
F068390	Metagenome	124	N
F076813	Metagenome / Metatranscriptome	117	Y
F083645	Metagenome / Metatranscriptome	112	Y
F088162	Metagenome / Metatranscriptome	109	Y
F088194	Metagenome / Metatranscriptome	109	Y
F091274	Metagenome / Metatranscriptome	107	Y
F093196	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_100000521	F026209	N/A	YPTITYTTGMMNKEITYEMYDDNAGEWRQVTEPAVGGIKWQKRESLGGETQSAYYDHSFYKVPFYGPYDQGRIHRALNRLYPARFNKFGGYSTVSAVEKLDDQHIKVEMCYHIGD
Ga0214921_100000522	F088194	N/A	MMNEVAATSEETTAYALGSTIGTLLNLKRMVEQNMTDYSNNLEGMRGLHPMWSKSELMDQFDRAINKLNTITYPYKY
Ga0214921_10000052241	F091274	AGG	MEYVSVSQAIKAAADLNTPSTEYLNNFLPAYRKYHKRQNFRRAVCKIGSGIAVFIVACLCYSSINNDSKLDIDTASGGEMAQHNTHGKHVVFEGDVKEVTNFIKEHVKEKTQTLNLRDHFQADVWGVYVEGEQTFRYYYQCLGHGRYSVFIINE
Ga0214921_10000052242	F093196	N/A	MADILSLLSMNNAQRIENFVPYIVGLCLAGSIFYTVYSPHASMVKQHMDTYGMDFEYVTPEGSCFTQNIEPIGHESHKYVLSLSKPAKPTNAEEPLYVMVGYTMKQVRVRYRSNALTSNN
Ga0214921_10000052250	F055399	N/A	MKSKQEVELQVKRIMGKWYDEPVFSKNKYIEAAYLFFWKWYYKLTSGLYYNCKYAAQRLFKGYDDLDTWNAAWYIARKAIPVLKAMRDRFHGTSIKWHREDRFGNIEQLTVDEVYAGSTEPGYEGPNAFTEDEWRAILDDIIFAFQWQIDLDIYHDTRDQQAFTVGEKRQKRGLQLFSIYYRNLWD
Ga0214921_10000052251	F083645	N/A	MIIQFGKGDESPYGKWADDPRVFIVKPHFKIVFDNGLGFYLLNSFRFNLFPKFYGTFHKTFWEFGFRFAGFNFEVMWNKAFTK
Ga0214921_10000052289	F088162	N/A	MMKKQTNKEYSLLVFMKAQHKYTDSEVHLETLCKEKYNGRGVGGGTNLSNGKRDQQFVFESKTDAKAFLRHPFTKAVILKDYDLVEID
Ga0214921_100000523	F036073	AGGAG	MSTTEETTGHEAPYNADLHCKKIAWMVKHSPDWDYETQTLEQYLETVPEYPTDEQVKDFNHLYVAPFVPFKKEIPFKGDEVNEAS
Ga0214921_10000052300	F068390	N/A	MMNETIEQIDWNALYSVGKDSKEFTFDMFDPLLLAENPVSQNWTATVTFRGRYGDRANAKKNIIFRGGVPAPHELEASHSWYMVQPEHSVKGQDKENDKLWRKYNKLELKLDEVFLAGFFNVASFEIQSFLIEAGWYSRKFSMRAGCSMCPCSPGYNLKSANGFIKNTAINVVFKKK
Ga0214921_10000052302	F044902	AGG	MSAYIYKLIKPTKSIWMKIQVDGDTTVVSNVYHMKFWYKPYAGMEDDKKLQKKLSREEAKTKELFKDVDVEYAITTYEGDISKPFIHGDFFGCWQVVAWKKLKNIEGDITNYPAGTNRILFNDESFSNVWCKAVLADKEDIYDHLTSPGMKVLA
Ga0214921_100000524	F076813	AGGAG	MKHRNHFDQNGDLRDIFAALAMQSLMNQGTPVPKWVAAQAYRYADAMLDVRDEVSHNDNNKETLINE
Ga0214921_1000005258	F016772	AGG	MKTILPFILIPLLVAGCATTGTDGKIDPAQTVENALPYIAPAVTLTCTVVLDQALSESDRIEKAKMINNVATIVESLTRGATPTPDQLQKALTDYLPVEKTHWSKYVVAIKDLYATQFNKVGGNGKLAVDVLNAIAKGCKDATESYVNN
Ga0214921_100000526	F014710	AGG	MMNATNDYKTIPSVFKKKGFTYTQLKREGNRAIFQQTREGSSLNNYEVVKIGKHNGYLMGGVMIEPAETYPGSSLWGITGWTCTSIDDAMKRYDDLVS
Ga0214921_1000005260	F032917	AGG	MLKKFAIFSLSSFLLCSCTTVTPNKVTDEIASYDATTPNGYDIQNSGFIGFTDDGRGLITQFGLLRYNTLIKAYKIRFKSFKGVELNENDGITEYTDKRNNKLYIMDQQHLVYYAILNSWRKDGKEPDSIWDKAKDLVK