Scaffold Ga0214921_10000039

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10000039
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 262308
• Total Scaffold Genes: 374
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 236 (63.10%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Associated Families: 13

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000354	Metagenome / Metatranscriptome	1244	Y
F001483	Metagenome / Metatranscriptome	686	Y
F005563	Metagenome / Metatranscriptome	396	Y
F008243	Metagenome / Metatranscriptome	336	Y
F011670	Metagenome / Metatranscriptome	288	Y
F012023	Metagenome / Metatranscriptome	284	Y
F013393	Metagenome / Metatranscriptome	271	Y
F015470	Metagenome	254	N
F035734	Metagenome	171	Y
F054849	Metagenome	139	N
F058128	Metagenome	135	Y
F061653	Metagenome / Metatranscriptome	131	Y
F103252	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_10000039104	F012023	AGG	MKQIDYKKLNERIVEQAYETALGEMSKEQLQKLIQDKFERARKHHEALTKLSTFSVN
Ga0214921_10000039111	F015470	AGGAG	MVTKKAPVRKAPVKKVVAKKTPVKKAPVKKTTTAPIVIDVSSTTKSASSMLDKAIDLIKWVDTPFKLFEVILLASVFFFGYFAWDSRTVILNAITQSSHITNLKEVNHLIPVAVGLQKDLDAVSVVVHKASLVTNTRTTMLAFGPKGRDNALDGLVSSLFNKDPIRNAAIIGMLNGEVVCDKLEVTGKTSEWEVKQGATFICRGGIPPEVGDFDGYVSVGFKTEPTELTVVKTRINLATSEMSQ
Ga0214921_10000039112	F054849	GAG	MKWLIVFLLLLISCIPSSSQPCDDCIGGVVATDTNTCLVSNFYKIAYSIHDPGLRHQQLSSWLTTNGNKCDSKQLVIIWNRLAEWGGAADSAELRGKLLYYFSRAEERERKEKS
Ga0214921_10000039113	F058128	AGGA	MDAIRWFPIVQPSYANVDGILADVHARKNEERWAEYNKELVEKIHFRDYLYDLYLKRAHENHIRMEIFNVSTIDYYV
Ga0214921_10000039197	F008243	AGGA	MHTLEQEIQAIVEQCQMGNISEDEHNYLLTEIRDIRAAQECAGNEELFRYVVQACNIAMKLV
Ga0214921_10000039256	F013393	AGGA	MRHVSGFSNSTRIRFIIDGFGMYATINDVFTKTATVSHGAALRYAVEYLAEIRRRSPVLGEGRPVGTVITHEGHQVQINLMAN
Ga0214921_10000039264	F061653	GGAG	MRYGNMPYKYRVVTKVSSKEDAVIDVFGRQILLTTNNYQTARKECIEWAAYDDILVHVINQFGSSKFSCDGASEAYDRFPKTAEAV
Ga0214921_10000039289	F035734	GAG	MTAKPFRQWLNDLWRDNCDEHDGWGQPRMTMKEYFHKYKYWLKREYRHQIKG
Ga0214921_10000039291	F011670	AGGA	MNISRAEQSVVKHNLEQYRIDQNRLEKQRTEDYAKKIEERRVEQIIAERVSRNLRLDLDKGRNIDIEC
Ga0214921_10000039309	F001483	GAGG	VDKLKELLLELLKFIGESPFRLFTVVFLCLFTFLGWVAYTEKDNFMASYRAQQALPKMNGKYEQAVNFILKNTDAELVAVFQVNTLLNTRKLVYLTTRGSGHDTVHDGTNVGLLTKNHSNNEDVIGLMSGKIPCGPYLTPQSYIGFTYKNYGVTYMCRISVPADPGLFIGQISVGWKEQPTEVELAQTVLIVASSLLFDKK
Ga0214921_10000039331	F103252	N/A	MYIEFDILNAMDNFDDLEDAVDLWAKKHNIPYTTKVAKGLKYRLGLNQPEHFTLFFITWADCEYKVRNIK
Ga0214921_1000003964	F000354	GGAG	MTTVNYDNFASFDINECCDHFDSEKQSNWKKINKFIVADGQEFAHIMETEFDFDETGANEYEAFQAGVKYALTKMNIAFEAAAVDLQVCEVDLVESMGFVLVRADDEPEDFVKRVLKKPVLMVDSWV
Ga0214921_1000003971	F005563	GGAG	MIDYYEALKEMHQGNVVKYVGTVNGNVMSENGASFCMCRGCIFLFDDGVIKWNKLGYMVYDPDFRYELTGETVDPRAWKPEKNRDRKEIKSKLGYSRVGLGNI