Scaffold Ga0214921_10000028

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10000028
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 301993
• Total Scaffold Genes: 371
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (8.89%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002045	Metagenome / Metatranscriptome	599	Y
F007365	Metagenome / Metatranscriptome	352	Y
F015094	Metagenome	257	Y
F018370	Metagenome / Metatranscriptome	235	Y
F026554	Metagenome / Metatranscriptome	197	Y
F027850	Metagenome / Metatranscriptome	193	Y
F030433	Metagenome / Metatranscriptome	185	Y
F032658	Metagenome / Metatranscriptome	179	Y
F044482	Metagenome / Metatranscriptome	154	Y
F045605	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_10000028139	F027850	N/A	MKGFQIYNKKQLFDSIDRISVEKIDQQVITKYAGKVIRVANVSKRYEVFDIAKYLKDKIELIEQNFTISKYQLRITSGTQFLQLVSDSVNIGGINFYKSFYILNSTDKSRRLSFYAGLHSEKFYFIGANNVGLSKKHLTGVNQAAEVASTGLNGETFNQQIEALNNILGHKVPFSKIREAILGDSKEIPQINHRKFDAFKNQIRFAKSDLRLKLTPSQLNQLFIPSENLTAVQSDFYIDAFFVFCEYLRLFNRQDSHIIKNETDRIMKITQWSVRNSVLEALGI
Ga0214921_10000028143	F026554	N/A	MKLDINEVYHNYIVRVIIFSLFTYKRLIRQPEVYKQSVYSFTKKRLPWQINLLIDTGIQMPRDKQREIVLEELLEGVESSDLTTVTVTFTTPLKETTIKVDLRNEDKYQSFLYL
Ga0214921_10000028163	F030433	N/A	MSLFAKAKKNQVEKPKSAKDKKVRLQVADPNFFSKVEKLEQLNDTLKSAKAQADMISDELRDLAKAEWIAEFERTKKNPESVMIVQTVLEDTASFMYVPSDKYISVSEERAEELRETFGEEIVEEETTFSFDSQMIEKYGEVLSMLIENCPDIADADREKIIKATTKYAVAKGTIDKLNQYGDVAEVFESVRPVVSLKNVEVIRG
Ga0214921_10000028278	F045605	N/A	MKITLQNPKKVVLQEEKSKTVSTLTVTRVVDLPKKKIVRAFVEEIEGPITLWEGAAYDAAGQWTDSDVQARLTQLYS
Ga0214921_10000028306	F018370	N/A	MIHILWATIRPEQFKDAHSEWIRRSDAPDNIKTYVAVNWVEHADNLRDYLKNDYIITLNTNKIGVCYPSYQLSSNLGIKMGVVDESDIVIFASDDFLAPQNWDTYLINKFEKMGDVGLMVRDGYQLPDSSNMLHPAITIPIMTWGCLKKLNSVIYHPSYNHMFSDCELYNNLKDLGLLYDDRLNDETVFEHLHYAAGKRNSDEADRAYNQKWKEDEITWNRRKLLPVEERIKI
Ga0214921_10000028327	F015094	N/A	MASKDKMFAIRVSEKLLEEYKQFCDENSMNASKRLRRFMEQDIEIWKKKKIQKDSGTQNS
Ga0214921_10000028368	F007365	N/A	MSSLKEISIRDYVSRIDFKRDDWKLSQMKEDMRRFLGEEPAIEIIYKKDVMINEVTGRAQEFKDIEMVQIIFTDTDDRFKKLEFKISDIL
Ga0214921_1000002865	F044482	N/A	MKHLSTFRLFEALDNSTLVTIEQFLERIQIPNQLRPTIVSWWNQNRSEIRIHFFRFNTTEAIGGVIIDGNTIVLNDDLHIRPMPPHVKLFLALHESRHCDQHRMENSITQYFDSVVRNDKQSFMRHYVELEKDANDFAIQSMRACGFDRQMNFEERMLRSNELAGEMVYQMMSTDIQRLNPVDFFDLLKKQIGV
Ga0214921_100000287	F002045	N/A	MEFFCVYCKTRKKFDKYVKTNRIKNKYIIDIKKIIDEEEVDFINDKTYLKILVFNKIQQAVEKKKDIYYIPDFEQDFSIEKLLNLKKMLGENNFNVLVFYNEFRRNPDIIDDVFGNLSKFSNSQIIRDY
Ga0214921_100000289	F032658	N/A	MLKKFGQFITEEASPRLPKSEEYWLKKGKEGKKVAIYTHDDMDGIFSAIEVKKYLLNSGFQIVKYGIINYSEGWKYTTVDPKLINVVVDFANMPGDKRDQYIDYYLDHHGSFTEFELDKYKSSPIQKKKTASAYEAICQNLGVPQDELTVSVIDMIDAAKYTDYEVDWSRLLDFNLSDIKKSDKVRLEFAAAFNQFLKRSDHKTLISVIHNCPDASIYSVFNVMKKVYPEHNVFPKTGQKKDFLSDSQWRMTQMAKRTRGQNSYKKKYTTQTEFLTDFSYGAGIKLDGYQIIGNLAFIPTGTWANALRARTIISDDFKSGLIEEEPNFILLQYGGTLQVCSYSKIDEIQNLPQYKDGSTINDLGIYMTSLLKNFQQHLGYYNPDTSLGQDEITVSGGHGGIGSISNIFGDCQVSPYEGCRFVDMFKNKIISDLSGVQFNIKTKWNEPVESKSKEPAMDNKVLNIEDVTKLDTKGDIIKENNRVIAKFKKFNLGGLR