Scaffold Ga0214921_10000021

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10000021
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 331654
• Total Scaffold Genes: 430
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 273 (63.49%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001483	Metagenome / Metatranscriptome	686	Y
F005300	Metagenome / Metatranscriptome	405	Y
F010226	Metagenome / Metatranscriptome	306	Y
F010999	Metagenome / Metatranscriptome	296	Y
F035734	Metagenome	171	Y
F054856	Metagenome	139	Y
F063700	Metagenome / Metatranscriptome	129	Y
F090068	Metagenome	108	N
F090390	Metagenome	108	Y
F102819	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_10000021139	F001483	AGG	MDKIKEALLEILNWIGQSPFRLFTVILLCVLGFVGWFVYSEKDAMMATYRAQQALPKMNGRYEEAYNFLLKNTDVELVSIMEVNTLVNTRKIVFVSTRNGGRIKQYDGLDVGLFSKNYDNNNDVIGLMSGKIPCSPYLKPQSLIGFAYRENGVNYMCRISVPAEPGVFIGQISVGWKQQPDDVEAAQTALVIASSLLFKK
Ga0214921_10000021145	F090390	N/A	MHKRIQELAQEAGMYVDLDGKPWPKWMGAEECELAYQKFAELIVEECTTVIDRNLFQNIGWNTSRAVRRHFGIDQVDE
Ga0214921_10000021193	F090068	N/A	LGRFSFDRDNYYMLDEDQLQKRIKEIMVDIMIVLYEHGIKEAHMGAMMRLLGVDDESAAKHDDESVVLDEKFGEMITKLNKPVPTTIPSGTTFH
Ga0214921_1000002121	F010999	AGGAG	MKLYTEVATELANRQANAYTPPSIPQVKQTAVEIPGVMYQARELFQPVVSQPNQDKK
Ga0214921_1000002122	F010226	AGGA	MAIQVIKDTAGNVLWTTDKAEINSESSNVTYQVFATALGTANAVGNLYAAAVSVPNGTTKEIYVGAGNYLILTGTNFTAVALGTASSAQSGVIGGGS
Ga0214921_10000021222	F054856	AGGA	MSKGSRPRPSIVSQEELAARHAEIFGTKEPKPRYVPPPLPEDMQNIESSHARQLGKNIPQGRT
Ga0214921_10000021359	F102819	AGGA	VKTREEIIHSMCVMYREDYEVPKIATDPPWVRGMTALERRGLWRVMEQIYDINIKPVLEKKYGNQTTESSRTSRNRRKR
Ga0214921_1000002148	F063700	AGGAG	MQNWTDKIIHWNQLPGTEVKRLLATWGKSPVEIAKYDRKHGFTSSAPKAQVPVKAEKPVPAVTKPVAKKAVAKPAARQKHTGADGEIKFVAHRNLYVGFLGGRVVVTKRTVDACRAVLLEQFGIEGVQVDA
Ga0214921_1000002195	F035734	GGAGG	MTIKPFRIWLTDVWRDNCEENDGWGQPRMTMPEYFAKYKWWLKREYQYQKGVRRGS
Ga0214921_1000002199	F005300	AGGA	MSRRIGPITLDGDTADRITLLTLKEYRAYLKKELTEWKKNPKTDTNPGGVWLHSEDVVTNTQVIEALTTVIKQYE