Scaffold Ga0214921_10000019

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10000019
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 337119
• Total Scaffold Genes: 427
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 263 (61.59%)
• Novel Protein Genes: 19
• Novel Protein Genes with Ribosome Binding Sites (RBS): 14 (73.68%)
• Associated Families: 19

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001443	Metagenome / Metatranscriptome	693	Y
F004053	Metagenome / Metatranscriptome	455	Y
F009512	Metagenome	316	Y
F011824	Metagenome	286	Y
F011825	Metagenome	286	Y
F015302	Metagenome	255	Y
F018925	Metagenome / Metatranscriptome	232	Y
F021237	Metagenome / Metatranscriptome	219	Y
F028709	Metagenome	190	Y
F038692	Metagenome / Metatranscriptome	165	Y
F038982	Metagenome	164	Y
F043765	Metagenome	155	Y
F055423	Metagenome	138	Y
F068392	Metagenome	124	Y
F078214	Metagenome	116	Y
F079586	Metagenome	115	Y
F102491	Metagenome / Metatranscriptome	101	Y
F102498	Metagenome	101	N
F102519	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_10000019110	F102498	AGGAG	VSKQIQYAGYSIVKDGTWKFRTATDEKRIAQLEAFGESVYMVSIKPVATKGAAAKELLAMDYMGKDPECVAFFVKHAKDENPFKPKKVRTVKVKVSKSNPVEAYFLAVEADQPVSRKEAARLRAEFNERVRIAYEAN
Ga0214921_10000019147	F102491	GGAGG	VQVVSWHDWLDRHIPYYEKERQQNRYYNNPPASVLIVDPVDRNRRVGLRGFAWSTWEAMDADIRVLRYRAEPVFLDNDTHQRWYWVFWDANEALMAVIRLS
Ga0214921_10000019162	F068392	N/A	MLDNLDIDQAVRLAILNLCVILHDCGITEVHVGGIMRILGVPDNLAQEHDDERIILDNEFVKYVDQINEPRPVDQALH
Ga0214921_10000019163	F011824	N/A	MTLHSYRTSYPLFTVIHRDPAAKARLIAWSATSRSIQAQVEENRMHIFDHNTLSLFLLTWTHGWDNLVIWDPWSKRHINI
Ga0214921_10000019186	F001443	GAG	MYETTVRTPEGERKDRVYAKDLQEARVLFEQRHGPRNVPYIPHIIPS
Ga0214921_10000019206	F102519	AGGA	MKRIVLALTCVLLNSCALLDAYLMAPYDANEYLQITEIRVMAGQYRQQCDNFQASAVNAQDITRRTMMFERYSEYIPRNENGFKAARTLNEIAQGLGTAYSKGIVSATFCRLKYNNIEHAAELIQRVTAGRPRK
Ga0214921_10000019224	F055423	GGAG	MKAREIYPKYKLWTAPVRIQQPNYVGYIDVTVTADNQQDARRLMRAQYGVADWHIGSVKEVR
Ga0214921_10000019227	F038692	AGGA	MRASEFIVETTVSGSIASVAMPLGGMITRNAGSFFSGKYSNSADPYPNTPAYMKKGKKPRAR
Ga0214921_10000019286	F011825	N/A	MIVEQQKKPPVERYYYSEDEWSRLGCGPLPPERDRARQLENVVSQGNPRIDGKNIKGYN
Ga0214921_10000019299	F079586	AGGAG	MSVRIESRSSEIDTERCVTNAGGRYDLVIAAAQRLREMKRRARETNSWVTPIDALKEVQSGTFNMTDYLIKVK
Ga0214921_10000019303	F038982	GAGG	MSKMSDVLKQALAKKQGTHHLEGDDAPQVERKTAKQRAPVIGKKPPTRSAGRGR
Ga0214921_10000019317	F043765	N/A	MNYYYELDERTKKANLEQWHLWCMPNCSPAEGGRMCFKTHDDFVANSRRVWLENANGVYLVKPVWGIYRGQVDDREFTMIKLRARTIKWWEDE
Ga0214921_10000019318	F015302	GGTGG	MSKDEYYANTAARLDTIIGGDTSHYQRLIRVKAEYDELAREVPVGQGFLTFYDYVKEYYGVKLMFEGDDLKLAYTVIDDKKYTVFLLKFNK
Ga0214921_10000019399	F009512	AGCAG	MDELLERLDQIERKIPQIRNKVARRDLMKMLKNIDAAINEISRESVECRRLHKETLRHKELVQQVKTLIANLEQHLTFAALLNG
Ga0214921_1000001940	F004053	N/A	MLIREFALDKNVNDPVKLLALATFLKDRAQDENAQAQISQDAFIEAAKSLDITITPESLAELISKDPLKNVLEPLEPNSGVVRFKGNTEEVTGMTVDQARAVVDANAKSAMRRRQ
Ga0214921_10000019414	F018925	GGA	MAANVYTTLANTTVYTDKLQIATAANAVTYQVYATALGSAAAIGNIYTAPITIPANTVFEVYSGAGNKVTVVGSPFTALELGTQSSAQYSVFNSAGQ
Ga0214921_1000001949	F028709	AGG	MKVELDQVYTMKIANGDELVAKITAENDTSFTVTRPLTVVPGREGIQMIFSLFTSNPDKSVTINKAQVALIAPARDEVQDSYVEATTGIKPVRNSKILMG
Ga0214921_1000001961	F078214	GGAG	MTRDLTPFKLWLQRMYMDHKDEANAYGFPTCDAATYFRMYKYWLKREYRHQQQTAAEL
Ga0214921_1000001980	F021237	GAGG	MRYYDYEWDLEPNRILLDAELNVDALGWKAGDYFKVANVNGRAMLVKVDPLEKFLRDGVGNEKI