NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10000017

Scaffold Ga0214921_10000017


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10000017 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)348701
Total Scaffold Genes417 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)276 (66.19%)
Novel Protein Genes16 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)11 (68.75%)
Associated Families16

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001009Metagenome / Metatranscriptome807Y
F001483Metagenome / Metatranscriptome686Y
F008244Metagenome / Metatranscriptome336Y
F016150Metagenome / Metatranscriptome249Y
F019833Metagenome227Y
F020009Metagenome / Metatranscriptome226Y
F024790Metagenome / Metatranscriptome204Y
F026269Metagenome198Y
F029752Metagenome187Y
F033430Metagenome177Y
F037225Metagenome168Y
F045098Metagenome153N
F052597Metagenome / Metatranscriptome142N
F090400Metagenome108N
F090402Metagenome108Y
F099305Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_10000017163F033430AGGAMDKQIEYKTSENKRDWFSNHVLTKEQVAQLIENKLQRAKVYQEAIEKVKKLTYTN
Ga0214921_10000017229F052597N/AMNLNLSTFRRSFNPRREFNPADRKDLLEFKFFKKHGKWKTGCPFFLEDPFVEIPAMCENKFTTYMLEKMK
Ga0214921_10000017246F045098N/AMTGRELHTMYQQWCQGNDQYDFRWLDFVEMAARQFKQPESEVLRELQKHYWFVKNNKECK
Ga0214921_10000017258F090402AGGAMILINIGVVLFFGYILATKDYKDSPKWMYYMDGIIFAVNFAIVFLYITNMIGI
Ga0214921_10000017289F037225GGAGMNKDIEKLFKQAKGYVETDEDGNRSTYTYDFDPDMFANLIIKNCIQTLVNHGYTDAATVLETEYAEEWELYQFPEI
Ga0214921_10000017300F008244AGGAGMFNTATYAFIDGVSDFKKKFVEQTVQHEGIKTAMITFVDAQSKYTKQAADSGMQSMMALGMIFTSKEFYSQLADQYKTMVPAFNTKKSK
Ga0214921_10000017304F016150N/AMTEEKKSKNPFINLANAAKKDSKHPGLAKAPKSQGPKPTKGSGGATVVRRSGRGG
Ga0214921_10000017307F099305N/AMIHIKRFVDKVSLIETKQGRDVVIPISDARGLRDELTKLLADNYELLQNTTTVEPVFQVEMNGGRF
Ga0214921_10000017312F029752AGGAGMTRDYKNLQYILNKNPHELFEWWNTLNDEDQAYAMEIIIEYRKMLDEPIVEDLSLACDLLKQFML
Ga0214921_10000017323F019833GAGGMFELRYLVRNGWDGPEQVLQYRTQLEVTDYSTKTDDGRYVSVKKWNEWQDVPIVEDK
Ga0214921_10000017348F001009GAGMASNLNSEFNYRYQVIGSTPWEKIKTLQGFYVGRKRAAVLEECAELKYQAKLEELKHLKTVPALPHILLNLQAEILELESHLDDQKHAFELNRKEIKILEKLLAELYAEVEPTRLKHPDGTPYSDDEMFEANANYEFTVTVGREIQSEIIAMGRPSPAKLLNAMSNPQTLQSLMMVGLVPQGTVLLEQKDIMLELPNGETTVLDKVAEEQKTLPAKKKIKRTK
Ga0214921_10000017349F020009AGGAMIENTTPPTQEEIAQARENAFNAEHPSSWTWDEAATTYVAPVSIPSDGYPYLWDEATTNWVPFPDYPRE
Ga0214921_10000017370F026269N/AMRYLLIQFLRKPGGQIDEQVTVAKKVKPSDLQTCNVILDYAKKKVDKCVIEGKSLEREWDRMHDYYVRIYPNLIAQLEKEATITEKTNGA
Ga0214921_10000017373F024790AGGMINWFRQKLRDFLYPQDNDCLVESKQHTRRGVLVRGSSLDSRGMSFTIHMASGGYVLEYSAYDDKTDRHNHNLHIIPSDQDMGQGIAHIITLEMLRK
Ga0214921_1000001742F001483GAGGVDKLKDFLFSLLTYIGESPFRLFTVVFLCVLGFGGWIVYTEKDAFLASYRAQQALPKMNGKYDDAYNFLLKNTEVEMVAFLEVNTLLNTRKVVYLATRNGGRDKRNDGLEVGLFSKNYDNNNDVIGLMSGKIPCSPYTKPQSLIGFVYKEYGVNYMCRISVPAEPGVFIGQISVGWKEQPTDVEAAQTAMVIASSLLFNKK
Ga0214921_100000179F090400GGAGGLTNTNSSNTITITGGGASGMNSISPISIGSISPQSSISLDDSYLNNLFKNINRSDYVKRYEVIETTEDVLALSVAWKRLRDSKDKSSHYIGITSLLDDNLFRRVEESDRVRATEIRDYFSKKIMLWSLKGVKLSKYRQDLNTFIHGNDKKVTEELLPIIFRLPEFYDYDVKFDIFKRDIKLELPTFDSPPLKQITTLTPITSFYKSNKRVKQHEYWLKNSNGNAHMISVEPKNPLKHIWDKMFTNEHLRIEGTYYPKKYDELQYYQILHWSLV
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