Scaffold Ga0214921_10000014

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10000014
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 367104
• Total Scaffold Genes: 464
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 317 (68.32%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016150	Metagenome / Metatranscriptome	249	Y
F018911	Metagenome / Metatranscriptome	232	Y
F033804	Metagenome	176	Y
F060911	Metagenome	132	Y
F078714	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_10000014149	F018911	GAG	LTDYITTFFAIFLLDIVYTYYLRCVANDNVLGASFWSVACYILGSVAVINYTTNHWLMIPAMAGAFCGTFIGMKIRKKD
Ga0214921_10000014198	F078714	N/A	MKNKTLSFTIEQPKHRAHRVLFQENTPFKPKVVQSKIVYNRKPKHKGNQNEY
Ga0214921_10000014278	F016150	AGG	MTEEKKSKNPFINMANDAKKKNQGEHPGLGKAPKKQGPKANTKGFGGASVVRRSGRGG
Ga0214921_1000001437	F060911	GGA	MKIPREVRELESLIKVNKHLGIALSELTNTHSYLGSLREQKTLISVKLKLEGIIERTLQAEKLAKDSFFRKLK
Ga0214921_10000014449	F033804	AGGA	MRNPALSGKKYFYAIGQRVRAKGLTKDQGMEFYKIDSAPDYARIAYDAGFRGLRLN