Scaffold Ga0214921_10000013

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10000013
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 373949
• Total Scaffold Genes: 478
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 358 (74.90%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002267	Metagenome / Metatranscriptome	576	Y
F002869	Metagenome / Metatranscriptome	524	Y
F003826	Metagenome / Metatranscriptome	466	Y
F005563	Metagenome / Metatranscriptome	396	Y
F007163	Metagenome / Metatranscriptome	356	Y
F039034	Metagenome	164	Y
F041019	Metagenome / Metatranscriptome	160	Y
F061653	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_10000013104	F061653	GGAGG	MRYGNMPYKYRVVTEVSSKEDADVDFLGRQVLLTTNNFQTARKECIEWAAYDDILVHVINQFGSSKFSCDGASEAYDRFPKTAEAV
Ga0214921_10000013257	F002267	GGA	MKLGRFSAIHAPVQRIYKRPAVVAANPTPVLDLDAANYSAVPTTGSTVAGTGAHTITVANAGGSITWQSSNGGVFRKSTSSATDVIYGGPNYVTGQSYTVFMAYKRIATSDGRLLNTQSEASKDWLMGLYNGNDQTFYPNFAVNLPSTGADLFWHLDWATWDTSTGLGQLYSATSVSPSSVTFSATNAGGGGFDQLRLFSRSLGSEVQTADIAFIKVYNDVLTLAQIKALYATYKTRFYP
Ga0214921_10000013283	F039034	AGGAG	MKERELETKSAGYYAFAASRDARMKATAMWSHYSEAQKVQAERMKLGLELCYSAKGIYVNPRKKFIAIKIDNPTVKDRKNLSLLEGDYEKAGITKVVSDQGVTYRIAKV
Ga0214921_10000013397	F003826	N/A	MDPITIGLAFAAAQSAVSHIKQAIALGKDINSLAGQFSKFFESSDSIHRERTKLKAKASIQGKTDAELGHEALQIAMHSDALRQAERDLKDMILWQLGKPELWEHMIKERTRLFKERAEAQRAEEERQLAHKKKMADMGMMAMYFLAGSVVVFAFVMVGIGVYGQMEEKRIYEQKVADRNLVLRRQAKERADQQKKELQDYVKN
Ga0214921_10000013418	F007163	AGGAG	MTLEDLQYIFDRQIEEGTEKLYFMLVDGDRLPVVQRHPSTDLAGLLPMLSSFEYAGSPAGMPRFTK
Ga0214921_10000013422	F005563	AGGAG	MIDYYEALREMNTGKVVKYVGTVNGNVWSDNGASFCMCRGCIFLYDDGVIKWNKLGYMVYDPDFRYELTGETVDPRAWKPEKNRDRKDIKSKLGYSRVGRNNV
Ga0214921_10000013424	F002869	GGA	MTNEITVEMLDRKIAWCEQQLADAKAATIHRMQDFYFEKTRASVAEDWPEAFTLQELADTLGVDQVRYRIYYSQDNLTCRLFVFRAHCTKSEEQKMLALGFVLAQDGDTENIPDQPVEEVEE
Ga0214921_1000001351	F041019	GAG	MIDGIKSATTTLKTAQSAGKELGAVVSSQQADMEDTIQREHQARVKSKLAEQHRASTLELRALEKFESKVKYEQEIAKLKADTIRKHGKDAWTKVEAEKALIEKEHQAELSAMDHDRQKQVDVLCWCFTAGALITYFLKLYKL