Scaffold Ga0214921_10000010

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10000010
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 409328
• Total Scaffold Genes: 369
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 93 (25.20%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (13.33%)
• Associated Families: 15

Taxonomy: All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021770	Metagenome	217	Y
F031486	Metagenome	182	Y
F032929	Metagenome / Metatranscriptome	178	Y
F035189	Metagenome	172	Y
F037579	Metagenome / Metatranscriptome	167	Y
F048300	Metagenome / Metatranscriptome	148	Y
F048303	Metagenome	148	Y
F053784	Metagenome / Metatranscriptome	140	Y
F061851	Metagenome	131	Y
F062449	Metagenome	130	Y
F062763	Metagenome	130	Y
F080047	Metagenome	115	Y
F085146	Metagenome / Metatranscriptome	111	Y
F093194	Metagenome	106	Y
F101166	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_10000010124	F062449	N/A	MTDIIPKSLIQICETHSDGTFQVGRRNTKVKNSVADAQDQAPKWNLMTHSISPRHPLAAWLWLKDPLFRVSPEPLRQRLMLDAITEWQERCSSLDFPRVYSKKKALEGFGAQRLDLQQAKAAMIAMERYTQDNPLLWILYNDKDKTIAFLDDKMFPREGGYKQIWIIREPSWDRLWDASSWSGGYVVSWLQAQEQAGFNVAWPMEPTTATVKVMSAEYQAMEHSAGGLSKDELRQKLGRAKAMRKLASE
Ga0214921_10000010158	F062763	N/A	MFICNRMDSAKILPSIANVGNYRANEDWWFYIPAIIFVDTFLIFLVRFMPQIFGRPINQWYDDFGIVAVLSDVAIIAIGIAITRYIYSAFFMEEEGWNLLYFIGLAIVIQVIHDMAFAFGIVAKIPRGHNSMIDVFKAYIEGGPKIILTDALMIGGSIGIAAALKELDYHYTASLSLVTLYSLSYILFTNIR
Ga0214921_10000010174	F021770	N/A	MVDEPIDANNPLGLLDAILRMTVVLGLLGWNAFEALSLRTPYPSNMVVLWDSPIWRLILLFIVWVGAEWSPPVGLMTGIAVVMYIVNMIQIV
Ga0214921_1000001018	F048303	AGG	MDKVTPNISSLPKTHDLTKEEKEFVKKLDPQHQELHKLAIEWLETSYRPEWSHMYKDKEHSK
Ga0214921_10000010222	F080047	N/A	MDDPFAILKHPFEKSENPQTYMENVWTQVHKEPARHMLGLVGGNAVSLPRGNMVDVESDLFGLNYPLTASSDRQYQPPPVEQSVINRKSTKGSVSINVTPRHLPAIQMWPYAATFAPVPMNVKQCGRPEKY
Ga0214921_10000010228	F093194	N/A	MIRFFEELQASYPEEKSISMGLEALQAAKKSNPRLILDMFYEYMYKPANDLIMTRNDEAIMKLAREIMLTQFNELMPTLVIFDKYWPNMSQQNREVIWQYLTVLCKLCEKARA
Ga0214921_10000010247	F037579	N/A	MANAGTLLSDLDGKAPLSGDGDLVKMIYQDMNSGQDIRPGMGLPSGMAPGGVQGPMMPMPPPQQSTQQYQMDSGPPTAHIIGGQHPTSADFAQMLQSSTPGFAAGGNWASTNDYMQSSGSNHSQQAQLAAQIANMQASQGKAWSNILSGEVKIPILIAILVFIVNLPFLSVLVAHYAPWMLKTSGDMNIYGQASKALLVGLMFWGANRIILPLLG
Ga0214921_10000010257	F053784	N/A	MRQMSFRIGLLLALLVVLSVILWFMPKEGFQSLNTSSAAPAMEHQPVIYPARNVVQASPASPNQAPDYREERMSTPEVAHDPYGTNEESAAIPERLRHPERMFQPAPDNTTHSIAEASGIASASASQAGHSMTAFTPEFAQNGGEFMQGIMANDTSEPGAYSAF
Ga0214921_10000010283	F061851	N/A	MSVTIPTIEISSVPLPQFIPRSRREEITRDTANARNLELQRSVAPIQQAFFRPEPSTSAFGPKLEVRYNDQKGLASRNKPPTSVPAPSFDPAGPKLVGNVFFDQYAPEYDPRNVVRELRGSVKDDKSSRGEDESKRILSRGFSSRYVPQGFAEQEQLNSLEAFEQLRPKIDDLSKQYRSY
Ga0214921_10000010286	F048300	N/A	MSEESRTKTQRKSYSNLDMSGALALGFAEKTFQMLSQDADNALKRPWHKLERGLRIGRLREYVARETEKMKLCEEDSSALFKLLCAGLDRKMLSSKAAVTYDNEKEQITEVKGLVSHSAATGRTKYQLLEKKATGTQKKRSSKETPTPISSDGPQ
Ga0214921_10000010321	F031486	N/A	MASEASAQGFAFERRIQYVLEQIKLNLELGWTFFIMGEQEIRDHFKEQSLNGVDHMIQIKKPSGEQHLFLLQEKWKLLTNQREVSQFLDCCARILARMPQYTGQIHRMWVSRTVPSANGEKSLQEGQCIVVQTCTSQTLLAINAALMICEILGRRDLAINIIESISSLLPSKEEAIADPKNTFEPVSDFGEKRVLPITNKTVVMVKKID
Ga0214921_10000010327	F085146	GAG	MSDASKMFMGSDKRANVLPVKDASGPGFLGPAYNPADEMLAPAAIGVKRGGELGDVLGAVKGIIYYGDMIGFGTASSRFTEGMPGLRPLGVNYYVNSGITCSNGATMWEYVRTVPDGSALGKKVKKAIEDVGLPGLRGMGPGILEDAKSALDPFPVINAVVGSGYPQCVLEKHEIGDFNGNIYNVDNVLLVDPVGIKREGGKTYQERWVQQFNGDGWPIQISYDDWQKAPKTHKDNGCIADRKATPGLPEPEFCASEGFQTYKKEKHPLHKMITLSTAAISLLVLTTFWAVQSRK
Ga0214921_10000010352	F101166	N/A	MVKGQKTRKVSKGQKKSILTIPQLRKAFDHMDHVVSKLEKTAKHSFSDAVVQYREEWRKTFKRDLPPADAAAYLKFRYGLKSGSAKTRRNKTRGGSREGVSGAPLDYQTRPGVQGVYGNFPTYQTQGLDRYYSPAITADCGKPNAFPTDGSAASQAGGGIIDGLFRPLTPENPPSSAYAGMMTDPGKGTTPYPTSDPVTLPQYRQQPPLYLEPENLSAHTRIHPTDVFKTAAGPILR
Ga0214921_100000107	F035189	N/A	MPDKSKGERLKETITLLKKLPEVGIPIESYPYSEVQELMTAWVNGGPATRTTIDFKSHVGELILPVKEGTVSSLDLKAKKKSS
Ga0214921_1000001075	F032929	N/A	MKDWMMPVTIGLVALTAIAIGASVSQGMISNNPFEATDLFKKGMGLPCIWVFFDTSIPNTRQYSDFSARSSRALNLPFLNLCYESIAKQNSSKYRIQAISGLAGLAELLGGWDELPDKLKNPLATLEPADFAWIRASVLAKHGGLWVAPATICLKPFGDMPNIPVFFGTDTDETFVGTAGTPVPNFQVAWSPAAGNPLWVAWEAMSKKRLNKSGGGDTARGADKWEFLALAARFPDIDVRPLAEVGRKGAAGRRIQIEDLLAAGQEGDLPFEIGPMAVYVPLPWPELKNRRAFGWFLRLSEEQIAESDLVIRDLYRAAGVL