Scaffold Ga0214921_10000008

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10000008
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 456392
• Total Scaffold Genes: 479
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 137 (28.60%)
• Novel Protein Genes: 22
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (31.82%)
• Associated Families: 22

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007255	Metagenome / Metatranscriptome	354	Y
F009382	Metagenome / Metatranscriptome	318	Y
F009453	Metagenome / Metatranscriptome	317	Y
F010014	Metagenome	309	Y
F010748	Metagenome / Metatranscriptome	299	Y
F011564	Metagenome	289	Y
F013277	Metagenome	272	Y
F014361	Metagenome / Metatranscriptome	263	Y
F014946	Metagenome	258	Y
F015306	Metagenome	255	Y
F016120	Metagenome / Metatranscriptome	249	Y
F016250	Metagenome / Metatranscriptome	248	Y
F017603	Metagenome / Metatranscriptome	239	Y
F018866	Metagenome	232	Y
F024038	Metagenome	207	Y
F034079	Metagenome	175	Y
F034484	Metagenome / Metatranscriptome	174	Y
F037077	Metagenome	168	Y
F046855	Metagenome / Metatranscriptome	150	Y
F064425	Metagenome	128	Y
F069739	Metagenome / Metatranscriptome	123	Y
F102616	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_10000008103	F017603	N/A	MSQVQPPSPFVSDFPFANVEGNLFTPVCLRTHWDPTEMLRHILPQQKVGLPQDFRPWVKVCKNYVTSAPAIPAPMPPKDMVFPTGGEFYPPGRYAAAIDQESILRTLNHPLDKWCPSTKYIPRQSSDMYVAGMTVPDRKPVSDAFVSELSMPQALLRTDIYTCRSENDTKYFDRSPRLFNNPTKQDRYGAAKFYALPGGGPRGDPMPHGGVNEVPPTQQAIRAAWPIEQPGGPLPDYKKGDPTERPIRGFGSTRAPGTQAPNQQNLGPKPPGTGYTSFVGTTTSGLAAPVW
Ga0214921_10000008143	F102616	GAG	MSIEYKVPRLLWENFESVLLAQSKRYIGELAKRLGVPEKELLKKVLPTSDSLKVIIQDTQAESNQCKAYIQHDKLTIYCRKATAYGCEYCSFHRNKRMTVVEGTNPIQLQKVKDTSTLEPLWISKDTLYNSSGELVGKINKENGKVKIFVLGA
Ga0214921_10000008155	F016250	AGG	MSPINRLLLVIAVLFIAAVTYAFYYSSDLLKKNPFLDKNLLKRGMDKPTIWLYYDTSDVNSRQWLDFGARSSRALNMPFLNLCYETIVRQNQEDYRIEVIGGLTGVAELLGGWDQLPPGLRDPISPVNEAELNYIRAAILAKYGGLWLSPYCVSLKGFGKLPENKVVFFGTDLDETYAGPDGTNVPGFRALWSPKPKHPMFEEWAAITYARVAQKRGGDQIRGDAKWDFVRLSTEYVNTGIVVDPAVEGMRKKDGKRIQLEDLLATGTDGNLPFDLCAYTVYVPFPWPELRDREIFGWFLRMSEDQIMGSDIAIKYLLEKGLR
Ga0214921_10000008162	F069739	N/A	MSLDEQIFEPNVIVVGVFGSTNKVSEQDIQDNTLTLILQELGRMPDKVLIPTEGNSSIYIDNWAEALHIKTQTFQADWIRNGKIAQIIRDDRIAKECTHALVFLGQKSTRLEKFAEKLCKKGKTVFTSSHNQTLSQFEMSHCEPSRPSKALTHARKSSKGKEQTLLKFQKKEEC
Ga0214921_10000008215	F016120	N/A	MSNNDNRPPPLDRQSIEEATTEAEARSLEYDPNVRARYIREILRDIAQWMAEGLPEDTIRQKVPDFIEKYPELFKKIINKQDLSPVQSMLAMLDRMGEGNISQHQASVIIGKKLVDRYVTPQLNGADAKK
Ga0214921_10000008249	F037077	N/A	MPTTIYDSSLITQRRRATTESGSFINRISPWNTPPAGTSTNQPNTGYAPALGIWDQSIINTVKNGQMKFYRKGTGGCTTVDNGCPCSPLPASEQGCCGTN
Ga0214921_10000008250	F007255	GGA	MTPTWFPWIFVGGLVFIALSFTAAKYKDKDYKKMNLLQDFISGSILIAFTGVLVPDMFPKMELASLPTSFSGGFSNDDLDLQVGPPRLAGR
Ga0214921_10000008270	F014361	N/A	MSALSAFCMQLINFFEELCNTFPEERDIKMAIEAIKGAKKINPRLILDLFTDHVYNDLAPAILKRDVLHIRQFAQQKLSTQFNEMISALAIFDKHWDSMGTANQEIIWQYLKVLCILSEKARAT
Ga0214921_10000008288	F009453	N/A	MASAGTLLSDLDGKAPVFSNKDDDLVNKILADMNIPSQSNPVMMNNSAPPPASNGRMINSPNPNTTYPMAVDPGTATAHMIGKDYPTAADFANVMHAPQFSHGGSQFAQYAPQAAPQQPTLIETTKGNMYSDIISQIKQPLLVAIIVFIVSLPVINVLIGHYLPSLLRIGGDLTTAGLIVKALVGGFLFWFIQKVLVPLMVV
Ga0214921_10000008301	F015306	AGG	MMSKSVHSTTPHFEKQKIARFRRLDNDHISAIESLFKQFPFLNDRVEIHMPFNRAKSTFSSGTVWLWPKFDKRPVGYLIFIDGFAPCIWYPERQEGMTFRWLLPPNFCQKGATVCLANILAGESILQIEDIIVSEGKDLWSNHIFSERWHTLRDFWNSLPADQPLLAFKPRIVKPIPLNQWHLHYDPAIYWIIQADHSRQARWYWKDTVTIPEHKAVEFIAPVLKRSTEILSILVAYCTPYAKTVLPDTYSLYSQEGVSLGVASISTLNLSLEIRKVISDNPKGIPVEVTWNDSFNKYQVVRIMPDQTPITTASFFYHKNL
Ga0214921_10000008323	F009382	N/A	MAELNQPGFSRDTSPNLYHNPPFGTEYKAARKAYVPPVKDVYPARDSRYPAYAGPMQDARLVTDYRPQCTKNIRAGIQFDTKLWLVNHTDNVIEESRRRQVEWTGASLAMANTVPPPADIVHSNPFYSEVNPTGLLNGIGVERANVPCPALFGTFSFEPTMSEIRNNRKNIGLTTYYEGGRNSPRGAFPYN
Ga0214921_10000008330	F046855	N/A	MSLPAALTSQALTAITAISPLENFLQIFNTNPYFIGLMMLILNLGGRFISLEVTKKQEQFLQLPWVRRVLIFTVLFVATRNIWVAFWATVTVVLFLGYLFNENSALCIFGDGGRSGSKCSDAPKPGEEMTPEEKEILQRLSSKAQRYQTGGSGGKSTSKNPQQQALENSVGPPADEEDDVLHTDIYAANLTLLRNPQ
Ga0214921_10000008337	F010014	AGTAGG	MAQPVFPDKHTISAYDAFPMPQFMTRTRREVDTIDAINARQFEHWQTDGKYGVMNRPDINKQAPFYDMLPNDSRGSDKSYRSQPRFDVDASRGVQNPYFDKYDTTFDARNMTRELRASVYEDKHTGYLKESEKLLQRNFDNRWLNPNVVAQQAQAAEQLRPKMDDIRLFYNNKPSADTSNKLNFNFNC
Ga0214921_10000008339	F018866	N/A	MDSQRHNKTHKKPFNDIENPVGEADNNFKNLLEDSAREAYSRPWHRIERGLRLNRLRIFIEEVGPQFTMTKDEKDAFFIFLQKALDKKLLNTLKVVNYDQEKQRITIIRGLEIKRNQEGILKWGFSTKKPRADGTRKKKKDDIPSVSTHGEESTETKIEDEVNQIINN
Ga0214921_10000008371	F010748	N/A	MTSVLYGAGLNYQTGNPVRQEIVAVRREVDSLRKQVELLTEENLVYRKHLMKLLQASEGGNTEFTRDLMTLAGGDAGGTNREPGGGTVQGAGFRR
Ga0214921_10000008424	F014946	AGAAG	MQPCSYAWRGFRGVGKRTQLLKFLETQADKIGVPFEIKKGTWFLNKQSCAGGDPDEDDDEATGKSIPYEESNLHLGFDVARMSMSDKVFLQSILTRWTGQQDVCLVSSLIQSRYLVLYHAHFLTDESVLQLQECLEQYPTFAILLTTELPLSGRLRDFCFEIPVVGEDNLLANYTKKAKLAENDVWLDFFKKTINDWSDGWGTSKIADVRNWIYICLQRNLRWVDVIMYWVEAIYLTEWITPSMKAKLMEILWNAESGSGWVLVTSYRIPILWEHIHLKLAHQLYKFRSELATRIAKPVPLA
Ga0214921_10000008432	F034484	N/A	MDLSEVPYTLIFNLVLAAVLVGLVVYFMYFTPKYKRVDEGFFGGVARGSGHPDCLRTLPEGSEILDVLLSRVEANPAISEGSADYREFQLILSKLGCLKKDLMSPSGIVEATRYQAFETAHDRINVAEVCAMCLSQTIPARDLDIIFATWRDRGNVLLRKLCTEAQLTEKGVTSLEALYKKAWEDVYDIAKSRCLKTDFSKQNGGSTGGDVGAYEPEDLKDLRAYTNKYGNNLSASGWNGSV
Ga0214921_10000008437	F024038	N/A	MNTPLENIAHNIIYELWFSVAESIFKRVCEVTELNQEQIDALKVVALRPNDFQVLIE
Ga0214921_1000000855	F064425	AGG	METSTIQIDAFSTNLHGARILCQGPFPNGRYAPIMESIQKLREPFKKKILLTRATFSLSKYLPLQYDAVFQVKDTHDWTLILTYITYAPKPLLVVAEDVPIPDGLWQKLNKTTTFVNITSSYVLNIRPYDAIFFAPIEELATSYTDYVLKLLQSMYKASYSPKEHKEVLQELRVASAGVCWTKYEEDTQGGAIYWYDPVGNNQGDSLSNKQMSELFNWLSQQFNRD
Ga0214921_1000000860	F013277	N/A	MEKYTPPKSAPLPADFDEFYASLSPQERELHQLAIDKLQSSYFVQWTHFYKKWKKAKDAASTTVTK
Ga0214921_1000000885	F011564	N/A	MEIPIPNWVSIKNYRTMTGEKKTRAVNGNKLIQYEWMKEEVNEFYEAIYLENIEEIRDEAIGLIRTFQQFQDSKRVVSLWKKVRKDVLYVFPTRKIFIEAFVKWHKKKIQKNQALGVTPEELIDISKIKWK
Ga0214921_1000000889	F034079	N/A	MTSINQSSGQGALFELVARGVKDTYFLKDSKESFYPYDASYESSAHHLAERKTIVPINGTSWGNTFEVEIDPYGDVMTECAFEIDLPTWLPQLPRVLGGPLYKPSVINGLYPITTKINLESYGYVNYIGYFLFEKIQFYQDQFLIQEWSGDGLLAKQLSEGSYTSSFLQQTLGGLLEPIDPVTNLPTNRGIQLRATPGHLRVKLPLPGLQCPGDGGFPLVAMAWQKFRLKVTLRKLEDLVVCSNESLYRPNITPWLVPEFTYTGENGVQIDFTPNTLAEMGNPTILLSTVQHYVPPRVQEELRSTPIQIPFRRQFENNFTFGELDYIPLDKGGTAAVTRRLDGRHPTEKIFWFFRNQTSIDRNRLDNFSNDYFLPIPPAVIPPTATNPYTLFYGAYFYKMKLVIAGRDRENLHEPFLWQDICQLVKDEKASGLGIGEMKWSTGDNYGTIYPAPRQPEGTVNFTTADRPTLHIDLANITGNEYDGRRRSEFRVFTEGWDVYDVREGRGRLLFAN