Scaffold Ga0214921_10000006

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10000006
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 464605
• Total Scaffold Genes: 536
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 76 (14.18%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002779	Metagenome / Metatranscriptome	530	Y
F032658	Metagenome / Metatranscriptome	179	Y
F045605	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_10000006231	F045605	N/A	MEITLNSPKKIVLQEEKSKNITKLTVSRVVDLPKQKVVRCFIEELEEPVVLWEGAAYDAAGQWTDADVEARLAALYA
Ga0214921_10000006287	F002779	N/A	MKNLKLELFNFRKNLSVEDIQVSAIVEGHINALNSSSEKEVIHSLNETLKTYTFDKSVRFLLESLNDDLKEYQLLYELKHLYNILDSKNQGQIYRQPINVLLQTINLESDQDRMSKILNELAIYDWVPEIKLFVHNLIKSPEKKTNLLSGGKSESVYTIVEQVEDGYCCLVRDSWFILTENNIEKTLLENHVKDQEKLRTLRNLEVGMRFASIDDDRINFRISENLTIGLSTKKKGILFINDDEMNKETTLESLFASPIIPIVNKNFYPILLETSNNLNKLVEMDVVKRVSNLINPHLEVFAFNYKNAIYLYRCDERYGNSFFKYESALELVNEVRNELNYDLTYFYENNLSKELITKRKLEDKEREITLKLEDVELNIHKIESSMKMIGESNSLAIALGNLRKRKDTLEEEILAIRELQYKEREKERL
Ga0214921_10000006360	F032658	N/A	MIIKDFNNWKKIFEEASPRLPKNEDYWKKRGKDGKNVALYTHDDMDGIFSAIEVKKYLLNAGFKIVKYGVLNYSEGWKYTTLNPKLINVVVDFANMPGDERDEMIDYYLDHHGSFTEEQIKKYMKSPVQKKKTGSAYEAICQSLGVPMDTLTLSVIDMIDSAKYQQYGVSWQRLLDFNLSDIKKSENKRLEFAAAFNQFLKRSDTKTIIGVIHNCNDASIYAIFNTMKRLYPEHNVGRYGDKKEFIEDSTWRLGEMGRRVRGRGQKQVFNSQDEFLSAFQRNGLIQLDGYQVIGDLAFIPTGTWANALRARSIIEKELSEGKISKEPKFILLQYGGTLQVCSYKPMEEYGDELPKFKSGEPVNDLGAYMTSLLKNFQQHLGYHNPDTSIGQDEITVSGGHGGIGSISNIFGECNKEPYVGQRFVDMFKNKIITDLSGVPFNLNIKWSEPKEFKGKDPEMDNKVIGAEEVTKVLPSGKIYRKGDIGD