NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10000005

Scaffold Ga0214921_10000005


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10000005 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)474319
Total Scaffold Genes466 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)71 (15.24%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007255Metagenome / Metatranscriptome354Y
F010014Metagenome309Y
F013277Metagenome272Y
F014946Metagenome258Y
F029976Metagenome / Metatranscriptome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_10000005176F010014AGTAGGMTQPSFPDSHTRSNVSAFPHPKFITRTRRETNTYDTINARQFEHWQTAGKTYNRPDVNKQPQFYDMMPNSTRASDQNYRSQPRYDVGEDKGVQNPYFDKYDTTSDSRNMTRELRASVYEDKRTEFLKESEKLLERNFDHRWLNPDVMTQQAQAAESLRPKMDDIRLFYQNKPLKK
Ga0214921_10000005257F007255N/AMIPVWFPWIFVGGSIFIVLSFLGSKYKEKEYRNIQYLQDFISGSIFVAFVGVLIPDIFPKFELPSFTGLSESSDFELQIGPPRLIGR
Ga0214921_10000005276F029976N/AMISVPQGNDLGYSKNAKDWAIRRRVPKAAKSTSLRCNKSTSLRCEIGHGTVSETAKALVFNDDLINLRMLKVQSVLLGNIEGKPRGGLSYNN
Ga0214921_10000005444F013277N/AMQQYVPPKPAPLPVDFDEFFSSLAPNEKTLHYLAQDKLGSSYFVQWTHMYTKWSKMKAEKEQKEQKSE
Ga0214921_1000000556F014946N/AMTQPCSYAWRGAKGVGKRTQLLEFLKIQANKIGVPFEIKKGTWFLNKQVNGGDPDEDDDPTGKTIPYEESLLHLGYDTATMSMSDKVFLQSILSRWTGQQDVCLMASPIQSRYLVLYHAHLLTDESVLQLQECLEQYPNFVILLTTELPLCSRLRDFCFEIPVVGEDYLLREYTQKAGLLPQDVWLEFFKSTLNEWAADWSPNKITNIRNWIYICLQRNLRWTDVIMYWIMAIYETPWITNKMKGALMEILWQVESGSGWVLVTSYRIPILWEHVHLKLARQFYLCKSGL
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