NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255776_10133927

Scaffold Ga0255776_10133927


Overview

Basic Information
Taxon OID3300023173 Open in IMG/M
Scaffold IDGa0255776_10133927 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071413AT metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1632
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005727Metagenome / Metatranscriptome392Y
F037616Metagenome / Metatranscriptome167N

Sequences

Protein IDFamilyRBSSequence
Ga0255776_101339272F005727N/AMKALTRSRSADFHRSTMLKLLIGAGLLYLLWEPIRPVRVVTADALSTAADLIRR
Ga0255776_101339273F037616GGAMRCASRRSATPGGSNAPITPYTKSMNKTPDLNAIMADYTQQVIAENRRRQAIRDAAAAGTQEWFAKWEATRPQGTYGTWHISDRD

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