Scaffold Ga0255766_10084414

Overview

Basic Information

• Taxon OID: 3300023172
• Scaffold ID: Ga0255766_10084414
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1955
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009502	Metagenome	317	Y
F063484	Metagenome	129	Y
F101202	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255766_100844142	F009502	AGGAGG	MAVEVKKEEYEDIYDCIVSDQVPSNEMAEYLEDKGFYKYYIRRRALGSLWKRKDEL
Ga0255766_100844143	F101202	N/A	MFGVGIKDGRTVKKEPGIRNHGSRATRNGGKKMPRKKRTEKDIRHDEYVNNKKFWVQIDFDDCVSIHEELQAKQMFLGDRNKLVPAEKRLLEFTEDVMFGNYKEVTWQ
Ga0255766_100844149	F063484	N/A	ATGAEVFIKNLTQELDELAVKYNKTKDPGLRDQWFKKVSQVPPVSALEEARLSFRKKTLGKARTFRSD