NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255757_10429508

Scaffold Ga0255757_10429508


Overview

Basic Information
Taxon OID3300023117 Open in IMG/M
Scaffold IDGa0255757_10429508 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071409AT metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)598
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019764Metagenome / Metatranscriptome227Y
F040951Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0255757_104295081F019764N/AMKYWIIFSLFFGIQIHAEESAKKEWWEYIDGSVKIKFRFKEILNHQFLVEGVWTPEGGEAGHAGPAELVFKDIHNGSKSKINIRYFSLAFGHFEDLDIVLNKNDERYFNPSVNLDKTYLVNYYDLDKMSLWNYQHQWYPQPIFFED
Ga0255757_104295082F040951N/ASYEEPPNRKHFDSEEDYQKAFEEWKEVFDSILEKHGNFGGS

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