NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255751_10058820

Scaffold Ga0255751_10058820


Overview

Basic Information
Taxon OID3300023116 Open in IMG/M
Scaffold IDGa0255751_10058820 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2585
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F078417Metagenome / Metatranscriptome116N
F081277Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
Ga0255751_100588201F081277N/ALEKKIQELEDRVRVLEEENIGQSNALYECWNSLDARIDILAENKTDV
Ga0255751_100588204F078417AGGAMTSNPLSSDFSYKKYSLEQLDNWVNDALNCEDLTPQDIYDTIVKCVDESVECHKKYLTKSIELLSLLKGHREVDFGVGNDEPWDYTATGERFPRVTNNDWENFWAAENNSQYTEEELDAMCERAATENDKETCREYNLREAEYYNKRAQLDMQTRVDGYSYSTNKDKKSYDEMIADGWTMTDDGFWIKN

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