NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136585_105573

Scaffold Ga0136585_105573


Overview

Basic Information
Taxon OID3300023113 Open in IMG/M
Scaffold IDGa0136585_105573 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Deep lake, Antarctica - Metagenome #404
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1291
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Deep lake
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027372Metagenome195Y

Sequences

Protein IDFamilyRBSSequence
Ga0136585_1055733F027372GGAGMSDEIIVSSTEALYDDYANLKSQTPSGYAPFGLAGIVINDCDIICGNCATDEELADNDNGAIFGNSEWDYPAPVCEDCEKPLNVNLLVHKSYDPELRFRLRMTEELGGFANTDCLTIEEIGEKAAERAAEIGRDYAPTDMFAPDEHYEIPTDSAQYSNNIAPQLRQLAGYEDGTGKGTYNTLSTDIGYYIHKEDVLPAFREAYHSEAINREI

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