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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300023112 Open in IMG/M |
| Scaffold ID | Ga0233411_10000007 Open in IMG/M |
| Source Dataset Name | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_2_MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Restricted |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 110804 |
| Total Scaffold Genes | 95 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (6.32%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: British Columbia | |||||||
| Coordinates | Lat. (o) | 48.6569 | Long. (o) | -123.4875 | Alt. (m) | Depth (m) | 100 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005243 | Metagenome / Metatranscriptome | 407 | Y |
| F006666 | Metagenome / Metatranscriptome | 367 | Y |
| F020206 | Metagenome / Metatranscriptome | 225 | Y |
| F063711 | Metagenome / Metatranscriptome | 129 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0233411_1000000723 | F005243 | N/A | MSDLKTNSSLDEKEPTLSKEELNARRDEITAFYKDNIEHLEIQAEYEMLLATIEKARAERMQAQMFMAQQYADQKEGGVNPESEEALAFKQAMEKAAMSID |
| Ga0233411_1000000726 | F006666 | N/A | VNPKKHKEFNRGIAEEVGVHPQVVDDFIDFYYTKLRKKLSQLNYPRIYVDGLGTFELRKGRLEAAIKKNKSMLGNIAKRTYNGYAKSENITENIEQMTRALSQLEENIKLKKDFKSKKND |
| Ga0233411_1000000737 | F020206 | N/A | MGLSIKKANKTTEFTNLGVSKIIASTAVGKDILTRAHVSNTAAKAAGLVNGDLYHTAGLLKIVYDA |
| Ga0233411_1000000746 | F063711 | N/A | MDIMEPDTDREYWLNCLAEYELALQEEFLMQPGYGFNDEMIQLLKFEIEQCINQLA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |