 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300023109 Open in IMG/M |
| Scaffold ID | Ga0233432_10083401 Open in IMG/M |
| Source Dataset Name | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Restricted |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1856 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: British Columbia | |||||||
| Coordinates | Lat. (o) | 48.5847 | Long. (o) | -123.5008 | Alt. (m) | Depth (m) | 10 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003769 | Metagenome / Metatranscriptome | 469 | Y |
| F020898 | Metagenome / Metatranscriptome | 221 | Y |
| F050952 | Metagenome / Metatranscriptome | 144 | Y |
| F052534 | Metagenome | 142 | N |
| F069439 | Metagenome / Metatranscriptome | 124 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0233432_100834011 | F050952 | AGGAG | MQNTQTNNYVFLAAENACIVVKVNNVTVATDVQTADALIEVFLQ |
| Ga0233432_100834012 | F020898 | AGGAG | MQKTKVNFNKSIANLTANILNNTANFVMQETTKNSCKSIYKNFKFNSTTKSKSGNETHFTAQMYNNYYTGRLCMLTFKNNAFVSMYTLD |
| Ga0233432_100834013 | F069439 | N/A | LQKIQNTNFTIYTNKNFKNSIFIKTNAKNNLTYMCSSMQKVALCLQAHNLKNATVRILTKRFNNACAKKLAQAAVIRIANA |
| Ga0233432_100834014 | F003769 | AGGAG | MQQLKTITKTTTTKTKSVHVNTLYTIIENCFNNLQVLESDCTAANYFCASANIFAQLQVLYANTASCNNNNYVSLESIMQVFANNITYYDESNMYTSVVENTALQKVKLENYACLSN |
| Ga0233432_100834015 | F052534 | AGGAG | MLKQKALTKNLIATLCTTSNTLFVHNNKTVKKAAFVYTQNAQKVVRNLNAQQQAAFNNLPATYMQNAKQFLINKLAQSTILKS |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |