Scaffold Ga0233432_10037304

Overview

Basic Information

• Taxon OID: 3300023109
• Scaffold ID: Ga0233432_10037304
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 3229
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.5847
  • Long. (^o): -123.5008
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001222	Metagenome / Metatranscriptome	743	Y
F003188	Metagenome / Metatranscriptome	502	Y
F020020	Metagenome / Metatranscriptome	226	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0233432_100373042	F003188	AGAAG	MVDPKKRLRQTLFNIHPLSYRIKVKTPDKETMDKKLFIGVLKQLRKIEDRRDFMATEIGMDMTTYEDQFFSVIEDLMKMHFNKEQLALIQMYLYQLVPDKEWDGTITVEKNKKEETVPFKDPNDVWNVLKKFD
Ga0233432_100373043	F001222	N/A	MKTLENYIKQTLSEAAKINFAGHKFLLKVDTNEDPQKKGVKVQFLPTEFGSITPTEQNDIAIELEKRLSDGLGVYDMKVERDRNLKDKTIIGFFIYIEYFDRIIRKALSGQNPTNDGDSNPEV
Ga0233432_100373045	F020020	N/A	MKTYLVEFTHSDGRKEQVELTTDRLEWSIQQWSRHRSVTKHQVIEEGQSNSKQMLFG