Scaffold Ga0233432_10023121

Overview

Basic Information

• Taxon OID: 3300023109
• Scaffold ID: Ga0233432_10023121
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 4461
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.5847
  • Long. (^o): -123.5008
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022856	Metagenome	212	Y
F035770	Metagenome	171	Y
F087206	Metagenome	110	N
F088712	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0233432_1002312111	F022856	GGA	MIVGNFRDILGKLRDILYTQMPNGRVKGSHISIHIHMYRRAIPLRGIDSLERAQACAGER
Ga0233432_100231214	F088712	AGGGGG	MYIPIETQETHNSKSYIMNAGLVKGRNHLIRNGWQYCANKTSLTNGWNTGSYNRFMKCWTFDNDILNQRDVNLTEHNSTMQHLGWKQ
Ga0233432_100231216	F035770	AGGAG	MKPYKTITFGMAEFAYARHLREELGHTSEIIYPNKDTSKQDREGVWLLLTITGERLGTVSPDGIVRTT
Ga0233432_100231217	F087206	AGG	MSNHYNEQEMEDIQNYVLEQDRKGLLQNEITDISIMYNLHQDDDRDEILEFITESILYEKNVGGLI