Scaffold Ga0233432_10009977

Overview

Basic Information

• Taxon OID: 3300023109
• Scaffold ID: Ga0233432_10009977
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 7705
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (9.09%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.5847
  • Long. (^o): -123.5008
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004523	Metagenome	434	Y
F017299	Metagenome / Metatranscriptome	241	Y
F021776	Metagenome / Metatranscriptome	217	Y
F030052	Metagenome	186	Y
F058131	Metagenome	135	N
F072518	Metagenome / Metatranscriptome	121	Y
F082545	Metagenome	113	N
F094419	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0233432_1000997713	F021776	N/A	MTKDELEVKISTLQNLVTQKNEELTDYAAQIQRLNDELKDINKPKLTPLQFDELHEAIEEAVGSFDFDDSDNYDMDFHIDYDNRVAVENMSFQNADELARELYNSISELFAEIPENDNQLNQD
Ga0233432_1000997714	F072518	N/A	MTKFKVQFKNERTLKQLLSHAEQEVERWKEYGFVEDTTYWNAKVNDYRAQLYALYHEREEFDKLAQI
Ga0233432_1000997716	F004523	N/A	MEYLSTEITSAREANTIFKILGIKDVTTDRQRKNGTTVYELPLSQVWQTLEPKPIRFATYTTGYVRNVTEGLSSSYQINKTKPVVYESGMTSVERIMIPHWEDRLIYLAKFIIKNYYQKPTYIMSDYVMDCLREAYVRDYNNKLSNRLPFGDEVQVIVNGHRYNLS
Ga0233432_1000997717	F082545	N/A	MDFTYITVLDFASGKVCQYNLADVGDNYLFEDKDEPQAEEVEELLIDQGHVLEDCEWMIHADPTINQIKL
Ga0233432_1000997721	F058131	N/A	MTITFNNIGKTYKVSSDNTVKVIHHHDSIVSLCGEYFKNKYTNEWLSELDVQDSYDSHKLEEENDNKYY
Ga0233432_1000997722	F030052	N/A	LLMDNINDMDNKLQQLETLLQVHDWYYAMSDDNYYYKLGRKQYEQIWKLMDELKDNGYFTESENLYDKYSK
Ga0233432_100099776	F017299	N/A	MNNIEPLKITVEYYNKKISTEVDHSDVTLEQLHDMWLEIVRAMGYHENTIKEFYE
Ga0233432_100099777	F094419	N/A	MDNIKMTDAQLRKLIDGLADGLVTRIYGVANDIDDPRDNRIWQCDREDDEAVGELARLMTLLNLYEDREEYEKCHLVNQHIKRLEKIVENL