Scaffold Ga0233432_10003933

Overview

Basic Information

• Taxon OID: 3300023109
• Scaffold ID: Ga0233432_10003933
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 13305
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.5847
  • Long. (^o): -123.5008
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009033	Metagenome / Metatranscriptome	324	Y
F019396	Metagenome	230	Y
F026261	Metagenome / Metatranscriptome	198	Y
F048972	Metagenome	147	N
F070579	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0233432_1000393311	F019396	AGGA	MNINDWNPYLKLDPDGYPCMAQQTYEPLVSPDGKTFCKNYAFPNEYQYIEEKDRPLYTDEVAEWFFFNELTYLELFKDKPYAPEILDIDYKNRKIFLKWYGKSCNQIIYGSDIWPQGDWRQQIKEIILDQWDEGVYKLTMYPHCHYADSQGQMRAIDWYGCVPIDKPYIEEKYMQGIIHDTAQFRLEETGKAVDNVLNLETMFKRSLGTHVLWGNQDMSYIYKELFNV
Ga0233432_1000393312	F026261	AGGA	MSEYFGTTNNIIDWEPIVDICKKCTTGDVNTPVGVIDRSEADAEGTLLESYRGIMNTWLDAGYKLEEIKWVDYYPGEHFDIEIQNKFAEIVNAQPLRVFVSDVAPGNNVPYHWDVEDNEEEWLAQGELKRWVCFMDKPRWGSVLILEDEAFHNVEQGKIYEWDNYRSYHAGTSMGIHHQYLFHFLGRPNK
Ga0233432_1000393313	F048972	AGG	MKNLGVCDTIDWDKVIKQCASVDPQFVGPSHKRGDTIPGLDPILDMWEEAGYKTVHEGGTAGWDMFIPGKQFDESVVNAWNEFYGLECNNIWISRVWPGRFAPIHWDVHDDEVNLPDCPRYHCHIGKPQWGHIFIADEEIFYNQPQGTTWEWTDRKIWHAGTNCGTQPKYIWNAW
Ga0233432_1000393315	F070579	N/A	MTFYITGSTRGLGKYLCKHFDCTSVNKPIDLDVDIDKVVDLFEEGDIVILNAHASQLEYIERLKDKCKLVVMGSIAAVNFDRDMPEYSKQKWELEKTVQQLALHSKYPMLYLQLTSSSYKNYKMIANSIQFWLDNPDTTFIGYNINE
Ga0233432_100039339	F009033	N/A	MELYLNSTWKRIGISISGGADSALLAYLICSNTKADIHFTNQIRLWRTRPWQEHIANEVIDWFGYRFDNNFYVHRNLVPPEMEEPNTTLIEDEYGKMKPGNRIILRSHNEFIANKYKLDALYAGVNMNPDISIPGEMEERNQGVLDPHFVHNGVDICHPFVYTKKDWIIRQYYENDIVDLLNLTRSCEGEFEGLDYTTYTPGQHVPECGECFWCKERQWGIDNV