Scaffold Ga0233432_10001753

Overview

Basic Information

• Taxon OID: 3300023109
• Scaffold ID: Ga0233432_10001753
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 20746
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (34.29%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.5847
  • Long. (^o): -123.5008
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001222	Metagenome / Metatranscriptome	743	Y
F003188	Metagenome / Metatranscriptome	502	Y
F020020	Metagenome / Metatranscriptome	226	Y
F029450	Metagenome / Metatranscriptome	188	Y
F041866	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0233432_1000175311	F020020	N/A	MKKYTIEFTHSNGEKEIVELVTDRLDWSIEQWSRNRQIIDHEILEEGTTNSKQMLFG
Ga0233432_1000175312	F001222	N/A	MEMNKLEQLVEETLQEAAKVNFAGHSFLLKVDTNEDPQKKGVKVQFIPTEFGSLTPTQQNDIAIELEQRLEQGLNEFELRVERDRNLKDKSIIGFFIYIEYFDKIIRKALSNQNQQADAEIDQPE
Ga0233432_1000175313	F003188	N/A	MPKSTNPNKKLREVLFSIHPLSYRITSKELDKESMHKKLFIGIISQLRKIEDRRDFMAEEIGMDMTTYEDQFFSVIEDLMKMHFNKEQLALIQMYLYQLVPDKEWDGTITVEKNKKEQTVPFKEPNDVWNVIKKFDQ
Ga0233432_1000175319	F029450	N/A	MIKLQFTSTDEFETLFKNKTLAVTRGIIQGIETAMQSNKRSAKLFEIEFTGADNMYEISLPQSQWVTALDSCLEHLAAKELPDEQIDCWKLLEAAKAW
Ga0233432_100017537	F041866	N/A	MILFQMHHMWYESNMIDECWHSILQALRSAPKVDVKIKICFNYQTYIETPNVSSPKELLEKWDSHPLMQDFNPELTIKTDNDPFYNIADWRREVYDPEAKYTVWGESDTIIPRDFFAILDMVEIKQPHVLTFAGRPMWDNTWDVVTHERLQGYDKPCQCKPHKDDCIELLEAPWKYKDYITQKELNKFNDESGDIKIEQVPHKIDGSLVCISNGHKTPFIAPEMHFVREDTCFEYVCRKRNIPQVCVKSRLKGHNYWHPNKRSGTDATRNDEVFKKYSEESQAAMTKFLQTI