Scaffold Ga0233432

Overview

Basic Information
Taxon OID	3300023109 Open in IMG/M
Scaffold ID	Ga0233432_10000566 Open in IMG/M
Source Dataset Name	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Restricted
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components
Scaffold Length (bps)	35755
Total Scaffold Genes	82 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	33 (40.24%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location Name	Canada: British Columbia
Coordinates	Lat. (^o)	48.5847	Long. (^o)	-123.5008	Alt. (m)	Depth (m)	10
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F005287	Metagenome / Metatranscriptome	406	Y
F007770	Metagenome	345	Y
F024089	Metagenome / Metatranscriptome	207	Y
F039679	Metagenome	163	Y
F044418	Metagenome / Metatranscriptome	154	N
F048843	Metagenome / Metatranscriptome	147	Y
F086827	Metagenome / Metatranscriptome	110	Y

Family

Category

Number of Sequences

3D Structure?

F005287