Scaffold Ga0233432_10000374

Overview

Basic Information

• Taxon OID: 3300023109
• Scaffold ID: Ga0233432_10000374
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 43417
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (14.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.5847
  • Long. (^o): -123.5008
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004479	Metagenome / Metatranscriptome	436	Y
F034539	Metagenome / Metatranscriptome	174	Y
F050748	Metagenome / Metatranscriptome	145	N
F057746	Metagenome / Metatranscriptome	136	N
F064737	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0233432_1000037418	F034539	AGAAG	MLPKNLNTAKLKVKHVLGNHTTLPNYPDAEDIIYELIRDYCGKVAKEIKFTNISLKKKYSLDEEKANAIIMQLRNDKIIKVSLSNSAYTTYEVITNPYE
Ga0233432_1000037424	F050748	N/A	MKDNALAIGISSLEFTNILCSYYPKGIKEKFDIYLFVDDSKIDLDKLQGIFKEHDLDIFKNAKIIILNDLYDYYIEKHGYEGKAKDFLLSHGCLFKILMPIYLKEKFGVKRTLVSDDDVFILNDISYMWDEYEEFGIKKENLFYIRNKDKHEVMAAFNEIFESDFTLDEMNALSINAGNIIYGEDPKLEYYFERFMKHSFIHHQYFNFTGYTSWTVEQRFHHFNIHRYLSEGRKVKFTESKDLRLMQNRDKMMKAGTPPDKYLKVVVPSIIHYAIGTKKPLWLNDFLPGLEWRYGFVYEAKYELKGILYDKSWTPPPFKSVQKTGFNLKSDLKTNSVF
Ga0233432_1000037429	F004479	N/A	MHTGKVLVGNSGDRVYLQDNKVIKEAGVYPIKFKQQMDWLQNCTHPNFIKIKPISDTSFEMKKHPTWYDKICEQPLVKSIDQLDDLIHIVNDFDGYGADVDVRSYLDKLEGRTGYKYEGELNASSGWGFVHGDLTVSNILYDNDFIFIDPRGTEEQNYYDYGKLMQSFVMKYEAHIYNERNSKYLKFCREAENIMYEWYDEYQLKFFLAVHLLGAVPFFELNERYELAGMFLKKGHELFDELEIKYSK
Ga0233432_1000037445	F064737	N/A	MINDWNDSDPDDGFNPQDHDIEMDEIAKMYAMADMEEEQKTWAKKQAEKFYADFENLSIEESVLAVKSLIKTESVTLSEANKLMDNMIHVFQDDEEYERCHICLQIKNGIND
Ga0233432_100003749	F057746	N/A	MAIVGSFQEDLDIYLADYKGRSGASKQSDKDLKKIGNKAKGILDNGKMYSFEYFTPDETFYDTYPLVLGLGKSDNDHQLGINLHYIPYDARLPFLSDVFKSFKSTISSAINKSPGNPDAQPRLSEFTYDNLKKSLGRKYNVTYAIRQYRLDRIRKPRVLGYEDWYIGAVNNQNHFFGGNINEAQALYYKNI