NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0233432_10000245

Scaffold Ga0233432_10000245


Overview

Basic Information
Taxon OID3300023109 Open in IMG/M
Scaffold IDGa0233432_10000245 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)52103
Total Scaffold Genes76 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (15.79%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)48.5847Long. (o)-123.5008Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019909Metagenome / Metatranscriptome227Y
F020115Metagenome / Metatranscriptome226Y
F024582Metagenome / Metatranscriptome205Y
F050392Metagenome / Metatranscriptome145Y
F069998Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0233432_1000024519F050392N/AMGILGKGKAVGGITTDTLTQQEITYILKTLHDCSFEGKDVLLLADVVNKLQNQLKAK
Ga0233432_1000024549F024582N/AMKTTHNTLTHLLGAWDRLEVVGINPDNHKSILTSTLLPHPNEFGKRQVKIAIEYRVEEGHARLSPYIYAFLVMYDQNGHRRSVIKNGSWGCHGEDMMEFKLWFAKKLRDANDMQEQRIENAQDSITDFLS
Ga0233432_1000024550F020115N/AMTYEQFEIMRAWAERVCNTANDTDVNIRATDILHDITGILTSDENFLPRL
Ga0233432_1000024552F069998AGGALRTSRKNVYAAPTILTNIMAMTKKELIDFMSEYPDDAPVVIEVHDTTLYEDLYDFTFDGVSWKRFDLKANTEQEMHELRLCAINHSEK
Ga0233432_1000024553F019909N/AMTNFEQHIGQELPQAILDHIDAHTTDELYDQAHKLKFDSICPVVMENDSPELRKELKEASELLFKYIDFQLVTDEIWNSEN
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