Scaffold Ga0233432_10000211

Overview

Basic Information

• Taxon OID: 3300023109
• Scaffold ID: Ga0233432_10000211
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 55101
• Total Scaffold Genes: 96
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (21.88%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.5847
  • Long. (^o): -123.5008
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009608	Metagenome / Metatranscriptome	315	Y
F013325	Metagenome / Metatranscriptome	272	Y
F026041	Metagenome / Metatranscriptome	199	Y
F059026	Metagenome / Metatranscriptome	134	N
F096215	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0233432_1000021120	F026041	N/A	MIKIVKEKPIKSTTSVEGILVQVTGGQWYGITIFRPARNPWLGRASKSTTTGRMEFTAGSETFQMQFKEKPNFEELKETLVNVLNGAEAVKCKISY
Ga0233432_1000021132	F009608	N/A	MHINRYNMKYIKPLNEGRPMFQDTPNEFAYLDFAKWASKNKGDIKKELSNINDGTTFFIALRKLWMRWAMKYAKNWSYLHSTAVAKKDFGRALAVMLKKDNLIIRNQGNKLTDLK
Ga0233432_100002115	F013325	N/A	MAKTVKMDTTAPGVVTDPNEIINENPRKMSEIIADKRAALKKNEELLRALQKNEYDIPFGSVKLYKQVLKFLEKEADWGHTTATGLIMLYSNLKEQQPITRDKDWDGVIKLRGTSITIFWTMITSMKGKGFFSARDFVEMMAAFGADLSKVVGKVHEDNQALRDNHANMAKLDQEVNSPDVILDVAIDKYNEAEEELTKLMDEVDPVVETV
Ga0233432_1000021166	F096215	N/A	MADLQKGDKVTWVAEMQCVPHPEGKTDRKGEVLPVFRDKDMTGTIVNSHYDNKFTVRPDGYTTPRGMDSYYDKMVPGKKLSKI
Ga0233432_100002117	F059026	N/A	MEHIKDYKLFKESLDTELLTEKYSSDILRQFAAQDGGSRWRGGIAKDMQKFANLALDKISDADFTTTTPEAYWKGGDAKNPNKVGFFVDADPGFIKWAKANKKYMPSGLSLGNISKYGVVLSVIRGGIGMYHGFAMDRGSSYSRHRKGTEERYGILAKDYETNSLYNGWEGRPAAKVTRKNLIDAATRVYVLDLDSLRDKYDVSGLKQDRANSKAGATALKTAKDIKKENQARYDAILTDRAAMTDIDKAVKDSIELLNQHISDALKDGNMDQYGNFIIGKSPRGRDVKIEDGANAIRNMLNDYQRYKDYERQNKEAAADGREDNYYAREVKNYAKRLQDYSKNVKDKNYGW