NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0233432_10000091

Scaffold Ga0233432_10000091


Overview

Basic Information
Taxon OID3300023109 Open in IMG/M
Scaffold IDGa0233432_10000091 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)76127
Total Scaffold Genes133 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)98 (73.68%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)48.5847Long. (o)-123.5008Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001588Metagenome / Metatranscriptome667Y
F003440Metagenome / Metatranscriptome486Y
F006020Metagenome / Metatranscriptome383Y
F007024Metagenome / Metatranscriptome359Y
F024076Metagenome / Metatranscriptome207Y
F066711Metagenome / Metatranscriptome126Y
F100470Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0233432_10000091100F066711GGAMAKVIRSKWYKFIGDAYEYHGQDRDSKERTHSDVGWRLRSKKYGGVATFAKIPLIESVQDRPCPLKEKQSGIYILRDSIFPEGFYIGKGKCIHDRVWKHGVKLEGTSKWNKGVETTKEFEKYRQLRNAKGLTTLDDVEIAFWFTDKIDELEDQLLGAYTAKYNKTPSCNDTDEAMFDEWD
Ga0233432_10000091112F024076AGGAGMSKKITFEESLGDSDWGLIIDKNGRLKGLFIPEGSDEDDVPESIIQVCCTQFGINPDEFYGSDNEHATLH
Ga0233432_10000091120F100470AGGMTDMFEPDDEAIRNLVMLAKEGEAMDPINWGDLNITKDQAYIMMATHVLEMERNHLTDGAIIVKLLVENFVLNMKLLGKQ
Ga0233432_100000912F001588AGGAGMQNTNYVFLAAADAAIVVTVNNTVVATDVQTADALVEVFLTHNVNVLTDTIMCSSSIDFAEEEGFASDASAHNIIDAALDAL
Ga0233432_1000009121F006020AGGAGMRATDIVRQVLDLLDQVEGQHDIKDGAIDAEVHVHQNDEPENRFKQILAMLDANSFGPLANSPNEVVAPVSAVTTDAGGGLNGPKHPHDIRVKDPSAYPDQQEY
Ga0233432_1000009159F007024GGAMNVGEGDKAVIVFSVNPSNVGRIVNVSEYIGKFEQGEEFTAFGMQCFCAVHDHYWWIEADDLNIQLGPSPKAYIADSWLRKIVDPDKKVSTKAQKELDTFT
Ga0233432_1000009188F003440N/AMKYYLGQCEYKWSHAHKSMEHIWIRRELGDELYKTVESNNWEWHLLRSSSQTMPGDIYCRCDIYVEVPDSKQATLFALKFSNVRKVELV
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