Scaffold Ga0224557_1076369

Overview

Basic Information

• Taxon OID: 3300023101
• Scaffold ID: Ga0224557_1076369
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 10-14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1435
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0475
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027063	Metagenome / Metatranscriptome	196	Y
F045493	Metagenome	152	Y
F087112	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224557_10763691	F027063	N/A	MHHNQIINVLQEHGIAEGRLIANSKSGYCKRHRRHFVVFNAQVCNIRGRLLKQADLDLTLDGEKLTAAARAAGENFYVLYENDPNPFWKPGLIPMPRVLRDAVWWTRIHPEDEDLFLPMNSGPLEKKRVRLRCSLGRWQNRSAYSVDLWENPERESGRNMSGPVVQLLGH
Ga0224557_10763692	F045493	GAG	MAEGLTSGAPRLFFNRVWSSVPEVREDLLRCAGFKHVVIAEEGALDVGDLKTRVSAPIHVLTLSTAKSVPEGILVNCRRVQRAKRPGN
Ga0224557_10763693	F087112	N/A	GYPFSARDIFGDLRSRLAAEHRRPMSFERLAKMLGRSKSTTYNWFDIFHHPHVLGFLCLLERLPPAERQSFIEAHCRAYPTLDDPRLAHAPGKTAKLLELLDQRAGLTIITGGTDFSRAFVFTALAHAASRADGKLPAVAGIDLHHSNLFVPVESLVYINGGLGLDHARRLTQRIWPRV