Basic Information | |
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Taxon OID | 3300023101 Open in IMG/M |
Scaffold ID | Ga0224557_1000018 Open in IMG/M |
Source Dataset Name | Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 10-14 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 216327 |
Total Scaffold Genes | 227 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 186 (81.94%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Sweden: Norrbotten County, Stordalen Mire | |||||||
Coordinates | Lat. (o) | 68.3532 | Long. (o) | 19.0475 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F011682 | Metagenome / Metatranscriptome | 288 | Y |
F015630 | Metagenome / Metatranscriptome | 253 | Y |
F025374 | Metagenome / Metatranscriptome | 202 | Y |
F084819 | Metagenome / Metatranscriptome | 112 | N |
Protein ID | Family | RBS | Sequence |
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Ga0224557_1000018107 | F084819 | GGAG | VIGVEVVLGFAIGYFVGTRQGREGLQKALDSAQAIMASEETRKLLGEGLAALESAAGPALDRMGGKSGRSKAALLGSVMDEVLQRRHARRAAQAA |
Ga0224557_1000018108 | F011682 | GGAGG | MLSRLIRAIIVAAVLAMVIESLPDIKRYLELREMLPTAPERM |
Ga0224557_1000018209 | F015630 | AGGAGG | MASGHPKGFWRRTRNGLHSQDQVMAVDVQLEDHIREIEGLAGGYLRSPQDEAARQALLAELEKFDDQTARADAYSNSRSVLVRYQVPRSWLIGATSDTSTGQDVPSAEFKAQVALVKAAKNAIRDTTAEAQSALQRANEELTEVRRREAGG |
Ga0224557_10000187 | F025374 | N/A | MSRLPACRPANGDTLDYPAVPEEDLVTTGVLVYSAGTPIAVTIAGNHISDNQIGIWFSKAVTASGLTSNTFRNVATPISSGN |
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