Scaffold Ga0224557_1000017

Overview

Basic Information

• Taxon OID: 3300023101
• Scaffold ID: Ga0224557_1000017
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 10-14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 219228
• Total Scaffold Genes: 194
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 158 (81.44%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0475
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000765	Metagenome / Metatranscriptome	900	Y
F001268	Metagenome / Metatranscriptome	734	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224557_1000017176	F000765	GGAGG	MAATLAVPAEAMRGRRSHGDDHLDADHDRLDGEIADRGPAREVIAEMAWLLQDTRGNMLLDGSVLSGIIIGIAVEAAFSPSVLRPGVAGLACAGLLAGVVMCWLRAAVLLLLAGRPVLDQLNDQRWRAGAPVDPRVRWATLPPAQDSTDAWNWARVNLLLGAARIRRERIHLMDTWTFVTGACFLAWTLAVLLGA
Ga0224557_1000017179	F001268	GGAGG	MTETISATDTHTPGSPVPPRPETDAAAVRAIEEATAHIRERAQQIREAPQEHKPRLVLSKHVRGTSILDKIADAVNSFCGSMYVFVFITVGVVVWLFLGDIVGFDPLPWPLLLTILNLPQLSIMISLQVSANRSQAASDRRAIADHETLIALHEMGKQQLDILNGQNRVLDMLDNFASKDMPGTQREIQDCVNQILVKVGQPPVAG