NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247757_10000076

Scaffold Ga0247757_10000076


Overview

Basic Information
Taxon OID3300023097 Open in IMG/M
Scaffold IDGa0247757_10000076 Open in IMG/M
Source Dataset NamePlant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L126-311R-4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)75520
Total Scaffold Genes70 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)53 (75.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.3Long. (o)-89.38Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058015Metagenome135Y
F080669Metagenome115Y
F098799Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0247757_1000007652F098799GGAGGVTLFGDLGCPGVDVDEWRKQNRVPLFPGKVNRWVLVRTTRDNPTPDDLKNTLAAVFAKWFEGTVLDPALTFKGTTRSATADLIKLERVSKERLSLDNPARRREDLPGLGPTVAPGEVVWLEVTFAYRGQQTDMPWPVRTGAAMQLTSSAQCPVGADWMLDAAQTPTVDAPPEQTPGEKAGEAVNTAADAVAGGLFNLLWLPLTALGAVALLVWQARRGS
Ga0247757_1000007659F080669GGAMKNTLIVMSSNRELEKQTRNTLQNLASLGAMLLMETGSADVAFARCRALSWACDQLREYPDRDIVLMLDDDMDVPAETAQALADKARELGRACSAVYATLSAKVAAARWPDHPDLWLVGLGCVAIPRALLLELEQRSESFELDDRSYSAFTWCGPEKGSWIAEDFRLSINLGGVHLCPLPVGHIKKGALWPDDETIDQLARGRSREPEPQRRPSGAPLPSLNQQQANGGH
Ga0247757_1000007660F058015GGAGGMTDSPIRLSPSGPVIGKVATPGPGARIRLTEASSTMGGSQTIPTAPDAIGVNGFGAPPPLVLTLDAPKEALHYRANLALDVRNTATSPGGEVVLYLDVSIDGGTTYTNRAKNVHAINSTITDQVEARQMQVWLPLVLGSALGISDATPPPSIKLRARANQVVGSDAVQVNSQAISGGVTPVSELNGTIHMELEECL

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