NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224559_1103304

Scaffold Ga0224559_1103304


Overview

Basic Information
Taxon OID3300023091 Open in IMG/M
Scaffold IDGa0224559_1103304 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 S3 30-34
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1054
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049375Metagenome146Y
F076791Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0224559_11033041F076791N/ALISETGQEIVIDPKTTKNLMVNYPQVIDAINFARVPQRAIGRYMEAPSVTPSGIPSVVDPEFMASINKLNSLIENGIPAFISFDHLRETTNKVNQIEAEVSK
Ga0224559_11033042F049375N/AMLSIQIADQPLDLSDDFSVSLNLKSPLFNDVGDYSFPFKVPTTPRNMAILGWKNRIASTQSIYDTFEGSIRWNGIVLYSGQIKIKTASDKTFEGTLYINKGDFNYEVKDLILTSIDFGMESFASDDAAMDYFNWSLTHFYPDCNFSLPEITNMDFYDPPTTNPELYSYNLIFPDGKLHKTTTDGQHRTILIPFLYLKFVLNKLAENFGYRLQDEFFTSCTELSRLVIYNSVNMSEVIFGMQQLYY
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