Scaffold Ga0224559_1039104

Overview

Basic Information

• Taxon OID: 3300023091
• Scaffold ID: Ga0224559_1039104
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 30-34
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1914
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → unclassified Methylocapsa → Methylocapsa sp. S129 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0475
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062611	Metagenome	130	Y
F064563	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224559_10391043	F064563	GGA	MSSRQLIGGFAAALLGAGAMLASVAPTQATMLPTSHYATPYVQHVDCAIGAHIGPLGGCIIGHDDNPPVVVEHRVIDSPDPQAADGCSTKSVTRTDDSGASETHTKTNC
Ga0224559_10391044	F062611	GGAG	MSKIFFVHAATDVGVPVVKASRATIDEAIREAEFELSGDAAFVWIVDGDGHLILPTDQIKARMARSSRAP