NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224559_1032132

Scaffold Ga0224559_1032132


Overview

Basic Information
Taxon OID3300023091 Open in IMG/M
Scaffold IDGa0224559_1032132 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 S3 30-34
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2156
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046997Metagenome150N
F055381Metagenome138N
F058854Metagenome134N

Sequences

Protein IDFamilyRBSSequence
Ga0224559_10321322F055381N/AMKLFLKLLFILPALAATGSSIREVYLPPWYDNASFQTFELEIRDLPVRYVQLDHPCTLFCTNQVVMVSNGTARARLLIDLKKTPATFPIIVMAPDANGRMTPRQRLTCHLSLVPLPIQVEVRGDTFTVTNLTEEPFELEHAEAVNITSQDDRHIAGTLNGSGRLKLKGRAEIRLNRKPGPGGLG
Ga0224559_10321323F058854GGAMWLCVLCLFTSAWKSEAEIIDHLNARWQGCAWQANRLELSGLAYQGALFSLITQGPGAFSLPSGAFVLRLHVLPLNARDNEPVLVLWGRIADPRDKPLARLFLRKGRLVWVCPIDAKADSLFDAPKEVELETRELTPGLWATVDVFINPLPYQQTFGWNLEMNHPQDPAKPSGKPLHLARQLTSADWTLQKIEMPRLHAAWLGQMELLPADTPPAQMRPNILRQ
Ga0224559_10321324F046997AGGAVFTTFAYRTLSLIGCSLALGAAASPVTVGDVRTERDSIPRALARDKAEAIAIFRASQQPLLWLRAMSGISCIENKLQSTPTNAAAETSALLLTLGDNKLTLHADVLKKSYTACQPTNGLPLYVDRNRRRAPETYVDPEILKGGVNILTLKGTNQVPACLSGEALENYLRLRCDQKLQPGDYWRELHARKLDDEQLARLRYYDYLDTHVALRSVPVYQCMEIRSRNH
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