Scaffold Ga0224559_1004973

Overview

Basic Information

• Taxon OID: 3300023091
• Scaffold ID: Ga0224559_1004973
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 30-34
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6313
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0475
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005296	Metagenome	405	Y
F009261	Metagenome	320	Y
F016145	Metagenome / Metatranscriptome	249	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224559_100497310	F009261	AGGAG	VVITPTNSGNLLAGAGLGIFSWGAFLKADKIPLIRKLVTTKRKESAFSWMNRNKGMSLLGLETINYSIHGITSSNAVMFALGNTIFNVLMLWVYLPIRMVRLRKEHTKSVLKRVTS
Ga0224559_100497311	F005296	N/A	VAVTLLSYPMPIWIIWLLPSFEAGFWSALAAGKLRNRTRVRELLVHGTRPRTALPLIDEQLRKAAGIPTKSQAFLVRHTAILIRWLANTKAFEHCLLIGLKRIWTKGGAIDPNVRLSL
Ga0224559_10049737	F016145	GGAGG	MRLSAGRIRSLANRYALAETAAFPGIGTERVSMSRNGKCTAAFRQNHLQLAHQA