Scaffold Ga0224558_1019872

Overview

Basic Information

• Taxon OID: 3300023090
• Scaffold ID: Ga0224558_1019872
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3451
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0475
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004301	Metagenome / Metatranscriptome	444	Y
F017951	Metagenome / Metatranscriptome	237	N
F042119	Metagenome	158	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224558_10198723	F017951	GGAG	MAIAHKFETAGLGIAPFRLVRVEMRWFSIPGIPGSKKPGSSCMFCGHPIAECCFLRDANGKEFHVGNECIKKAGDAGLYDTVKKELRRMKNQTEADAAAATFREGRDILARADVRASLSTQPHPNSFFAAKNKTMADYYEFLLHNSPRGTVANTVGKLREIAMESIQ
Ga0224558_10198724	F004301	GGAG	MTATQFSLFDARPAAATVGMEQSVNARNAKRQLDTLRKQLATAQADLEDVDYNLSIVAMHQRASREGKIDANWWDAAMRFGMLDPGEEPVYRLGSYPVKVLRWIRHLIFTLNAERRDVLSAIADIEPKVAALSQIIGNAIQ
Ga0224558_10198726	F042119	GAG	METIIREVNPARLAWGIFDHAKSDYVNEGDIPASYSGDCIAMGQPVRKPFRMDGEMWVAIGLSNDGARAYRLCPMRIFNGTPTNYRDKSGSAERAEEARNDPNGFYDRMTVKHGGQQFVLCGPEVQIVASQHEDVFVPQVQLALF