NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224558_1006922

Scaffold Ga0224558_1006922


Overview

Basic Information
Taxon OID3300023090 Open in IMG/M
Scaffold IDGa0224558_1006922 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7739
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002781Metagenome / Metatranscriptome530Y
F005157Metagenome / Metatranscriptome410Y
F016565Metagenome / Metatranscriptome246Y

Sequences

Protein IDFamilyRBSSequence
Ga0224558_100692211F016565GAGGMTTPASAIKDEVRLLIDVQIETFGQPAQLTSSQLHEFHYRCERIGTLCQELDRIGTRSVIERRLERAA
Ga0224558_10069223F002781AGGAGMLLMNWHRVLFLFLWISPHVLLGVLVVGLCKRRLYREFPCFLAYVFYEIAEFILLFTLYLFALYSIAGVTANQYAYAYSVTLTFNIALRFGVINEVSKDLFRESQFLKAAARRSLQCVTGLLLGVGVLLAVYAPGDNSARWFAGVLAVNRGAAMVQSGLLLSLLLFSRFLGVTWHRPAFGIAVGLGVLTSVYLANYALRAEFTGEVAAGFLTLLTTGTYLVCVLIWIEYLWEPAPITAGPDDTGVPHDTGVPPDEVDTWNTELGHLLKD
Ga0224558_10069225F005157N/AVFSEFVNYVMRLKSAIEDFEANTLGAVPGLLGRLSYMSRLLDGNATGNGRYDHWGLAKVYGEDAAQCAIRASHRALLSAVLKKPLAVLLKDVPASCCNEHVTEKEFLASLTHCPPKPLSPAALAHLRSVLSALSALVESRDDANLRRASQLRQPAPEPRPPAGI
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